7M8H

Structure of Memo1 C244S metal binding site mutant at 1.75A

PDB DOI: https://doi.org/10.2210/pdb7M8H/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-03-29 Released: 2022-04-06
Deposition Author(s): Boniecki, M.T., Uhlemann, E.E., Dmitriev, O.Y.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.187
R-Value Work: 0.154
R-Value Observed: 0.156

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

MEMO 1 is an Iron Containing Regulator of Metal Homeostasis in the Cell

Dolgova, N.V., Uhlemann, E.E., Boniecki, M.T., Vizeacoumar, F.S., Vizeacoumar, F.J., Dmitriev, O.Y.

To be published.

Macromolecule Content

Total Structure Weight: 138.1 kDa
Atom Count: 11,239
Modelled Residue Count: 1,176
Deposited Residue Count: 1,176
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein MEMO1	A, B, C, D	294	Homo sapiens	Mutation(s): 1 Gene Names: MEMO1, C2orf4, MEMO, NS5ATP7, CGI-27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y316 (Homo sapiens) Explore Q9Y316 Go to UniProtKB: Q9Y316
PHAROS: Q9Y316 GTEx: ENSG00000162959
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Y316
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH (Subject of Investigation/LOI) Query on GSH Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain KA [auth C] SDF format, chain MA [auth D] SDF format, chain O [auth B] MOL2 format, chain E [auth A] MOL2 format, chain KA [auth C] MOL2 format, chain MA [auth D] MOL2 format, chain O [auth B]	E [auth A], KA [auth C], MA [auth D], O [auth B]	GLUTATHIONE C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain E [auth A] Focus chain KA [auth C] Focus chain MA [auth D] Focus chain O [auth B] Interactions & Density Focus chain E [auth A] Focus chain KA [auth C] Focus chain MA [auth D] Focus chain O [auth B]
MES Query on MES Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain RA [auth D] SDF format, chain SA [auth D] MOL2 format, chain H [auth A] MOL2 format, chain RA [auth D] MOL2 format, chain SA [auth D]	H [auth A], RA [auth D], SA [auth D]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain RA [auth D] Focus chain SA [auth D] Interactions & Density Focus chain H [auth A] Focus chain RA [auth D] Focus chain SA [auth D]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain DA [auth C] SDF format, chain L [auth A] SDF format, chain OA [auth D] MOL2 format, chain DA [auth C] MOL2 format, chain L [auth A] MOL2 format, chain OA [auth D]	DA [auth C], L [auth A], OA [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain DA [auth C] Focus chain L [auth A] Focus chain OA [auth D] Interactions & Density Focus chain DA [auth C] Focus chain L [auth A] Focus chain OA [auth D]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain Q [auth B] SDF format, chain UA [auth D] MOL2 format, chain AA [auth C] MOL2 format, chain Q [auth B] MOL2 format, chain UA [auth D]	AA [auth C], Q [auth B], UA [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth C] Focus chain Q [auth B] Focus chain UA [auth D] Interactions & Density Focus chain AA [auth C] Focus chain Q [auth B] Focus chain UA [auth D]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain BA [auth C] SDF format, chain CA [auth C] SDF format, chain EA [auth C] SDF format, chain F [auth A] SDF format, chain FA [auth C] SDF format, chain G [auth A] SDF format, chain GA [auth C] SDF format, chain HA [auth C] SDF format, chain I [auth A] SDF format, chain IA [auth C] SDF format, chain J [auth A] SDF format, chain JA [auth C] SDF format, chain K [auth A] SDF format, chain LA [auth C] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain NA [auth D] SDF format, chain P [auth B] SDF format, chain PA [auth D] SDF format, chain QA [auth D] SDF format, chain R [auth B] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain TA [auth D] SDF format, chain U [auth B] SDF format, chain V [auth B] SDF format, chain VA [auth D] SDF format, chain W [auth B] SDF format, chain WA [auth D] SDF format, chain X [auth B] SDF format, chain Y [auth B] SDF format, chain Z [auth B] MOL2 format, chain BA [auth C] MOL2 format, chain CA [auth C] MOL2 format, chain EA [auth C] MOL2 format, chain F [auth A] MOL2 format, chain FA [auth C] MOL2 format, chain G [auth A] MOL2 format, chain GA [auth C] MOL2 format, chain HA [auth C] MOL2 format, chain I [auth A] MOL2 format, chain IA [auth C] MOL2 format, chain J [auth A] MOL2 format, chain JA [auth C] MOL2 format, chain K [auth A] MOL2 format, chain LA [auth C] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain NA [auth D] MOL2 format, chain P [auth B] MOL2 format, chain PA [auth D] MOL2 format, chain QA [auth D] MOL2 format, chain R [auth B] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain TA [auth D] MOL2 format, chain U [auth B] MOL2 format, chain V [auth B] MOL2 format, chain VA [auth D] MOL2 format, chain W [auth B] MOL2 format, chain WA [auth D] MOL2 format, chain X [auth B] MOL2 format, chain Y [auth B] MOL2 format, chain Z [auth B]	BA [auth C] CA [auth C] EA [auth C] F [auth A] FA [auth C] BA [auth C], CA [auth C], EA [auth C], F [auth A], FA [auth C], G [auth A], GA [auth C], HA [auth C], I [auth A], IA [auth C], J [auth A], JA [auth C], K [auth A], LA [auth C], M [auth A], N [auth A], NA [auth D], P [auth B], PA [auth D], QA [auth D], R [auth B], S [auth B], T [auth B], TA [auth D], U [auth B], V [auth B], VA [auth D], W [auth B], WA [auth D], X [auth B], Y [auth B], Z [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain BA [auth C] Focus chain CA [auth C] Focus chain EA [auth C] Focus chain F [auth A] Focus chain FA [auth C] Focus chain G [auth A] Focus chain GA [auth C] Focus chain HA [auth C] Focus chain I [auth A] Focus chain IA [auth C] Focus chain J [auth A] Focus chain JA [auth C] Focus chain K [auth A] Focus chain LA [auth C] Focus chain M [auth A] Focus chain N [auth A] Focus chain NA [auth D] Focus chain P [auth B] Focus chain PA [auth D] Focus chain QA [auth D] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth B] Focus chain TA [auth D] Focus chain U [auth B] Focus chain V [auth B] Focus chain VA [auth D] Focus chain W [auth B] Focus chain WA [auth D] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth B] Interactions & Density Focus chain BA [auth C] Focus chain CA [auth C] Focus chain EA [auth C] Focus chain F [auth A] Focus chain FA [auth C] Focus chain G [auth A] Focus chain GA [auth C] Focus chain HA [auth C] Focus chain I [auth A] Focus chain IA [auth C] Focus chain J [auth A] Focus chain JA [auth C] Focus chain K [auth A] Focus chain LA [auth C] Focus chain M [auth A] Focus chain N [auth A] Focus chain NA [auth D] Focus chain P [auth B] Focus chain PA [auth D] Focus chain QA [auth D] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth B] Focus chain TA [auth D] Focus chain U [auth B] Focus chain V [auth B] Focus chain VA [auth D] Focus chain W [auth B] Focus chain WA [auth D] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth B]