Molecular basis of DNA recognition by the HMG-box-C1 module of Capicua
Webb, J., Gnann, A.D., Liew, J.J., Patterson, M., Paul, S., Fores, M., Jimenez, G., Veraksa, A., Dowling, D.P.(2022) Biorxiv 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2022) Biorxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein capicua homolog | 186 | Homo sapiens | Mutation(s): 0  Gene Names: CIC, KIAA0306 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96RK0 (Homo sapiens) Explore Q96RK0  Go to UniProtKB:  Q96RK0 | |||||
PHAROS:  Q96RK0 GTEx:  ENSG00000079432  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96RK0 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*GP*TP*TP*AP*TP*GP*AP*AP*TP*GP*AP*AP*AP*AP*AP*GP*C)-3') | 18 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*TP*TP*TP*TP*TP*CP*AP*TP*TP*CP*AP*TP*AP*AP*CP*C)-3') | 18 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | D [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 46.89 | α = 90 |
b = 79.92 | β = 90 |
c = 106.96 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |