7L7V

Crystal structure of Arabidopsis NRG1.1 CC-R domain K94E/K96E/R99E/K100E/R103E/K106E/K110E mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Plant "helper" immune receptors are Ca 2+ -permeable nonselective cation channels.

Jacob, P.Kim, N.H.Wu, F.El-Kasmi, F.Chi, Y.Walton, W.G.Furzer, O.J.Lietzan, A.D.Sunil, S.Kempthorn, K.Redinbo, M.R.Pei, Z.M.Wan, L.Dangl, J.L.

(2021) Science 373: 420-425

  • DOI: https://doi.org/10.1126/science.abg7917
  • Primary Citation of Related Structures:  
    7L7V, 7L7W

  • PubMed Abstract: 

    Plant nucleotide-binding leucine-rich repeat receptors (NLRs) regulate immunity and cell death. In Arabidopsis , a subfamily of "helper" NLRs is required by many "sensor" NLRs. Active NRG1.1 oligomerized, was enriched in plasma membrane puncta, and conferred cytoplasmic calcium ion (Ca 2+ ) influx in plant and human cells. NRG1.1-dependent Ca 2+ influx and cell death were sensitive to Ca 2+ channel blockers and were suppressed by mutations affecting oligomerization or plasma membrane enrichment. Ca 2+ influx and cell death mediated by NRG1.1 and ACTIVATED DISEASE RESISTANCE 1 (ADR1), another helper NLR, required conserved negatively charged N-terminal residues. Whole-cell voltage-clamp recordings demonstrated that Arabidopsis helper NLRs form Ca 2+ -permeable cation channels to directly regulate cytoplasmic Ca 2+ levels and consequent cell death. Thus, helper NLRs transduce cell death signals directly.


  • Organizational Affiliation

    Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable disease resistance protein At5g66900
A, B, C, D, E
A, B, C, D, E, F
135Arabidopsis thalianaMutation(s): 7 
Gene Names: At5g66900MUD21.16
UniProt
Find proteins for Q9FKZ1 (Arabidopsis thaliana)
Explore Q9FKZ1 
Go to UniProtKB:  Q9FKZ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FKZ1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.219 
  • R-Value Observed: 0.221 
  • Space Group: P 21 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.332α = 90
b = 89.656β = 90
c = 149.398γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AutoSolphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesIOS-1758400
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesRO1GM107444

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-16
    Type: Initial release
  • Version 1.1: 2021-07-14
    Changes: Database references
  • Version 1.2: 2021-07-28
    Changes: Database references
  • Version 1.3: 2021-09-01
    Changes: Database references
  • Version 1.4: 2021-09-08
    Changes: Database references