7KCR

Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056

• PDB DOI: https://doi.org/10.2210/pdb7KCR/pdb
• EM Map EMD-22818: EMDB EMDataResource

• Classification: VIRUS/IMMUNE SYSTEM
• Organism(s): Homo sapiens, Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
• Expression System: Scheffersomyces stipitis, Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
• Mutation(s): No 


• Deposited: 2020-10-07 Released: 2020-12-16 
• Deposition Author(s): Sevvana, M., Rogers, T.F., Miller, A.S., Long, F., Klose, T., Beutler, N., Lai, Y.C., Parren, M., Walker, L.M., Buda, G., Burton, D.R., Rossmann, M.G., Kuhn, R.J.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: 2D ARRAY 
• Reconstruction Method: SINGLE PARTICLE 

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 480-mer - A180B180C60D60 Pseudo Symmetry: Icosahedral - I  (Explore in 3D)
Pseudo Stoichiometry: Hetero 480-mer - A180B180C120 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 214.18 kDa 
• Atom Count: 15,005 
• Modelled Residue Count: 1,956 
• Deposited Residue Count: 1,956 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADI30056 Fab heavy chain variable region	A [auth H]	121	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ADI30056 Fab light chain variable region	B [auth L]	107	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
envelope protein E	C [auth A], E [auth C], G [auth E]	501	Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013	Mutation(s): 0
UniProt
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1  Go to UniProtKB:  A0A024B7W1

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
membrane protein M	D [auth B], F [auth D], H [auth F]	75	Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013	Mutation(s): 0
UniProt
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1  Go to UniProtKB:  A0A024B7W1

Oligosaccharides

Help

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	I [auth G], J [auth I], K [auth J]	2		N/A
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: 2D ARRAY 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	jspr
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-12-16 
Deposition Author(s): Sevvana, M., Rogers, T.F., Miller, A.S., Long, F., Klose, T., Beutler, N., Lai, Y.C., Parren, M., Walker, L.M., Buda, G., Burton, D.R., Rossmann, M.G., Kuhn, R.J.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI076331
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI073755

Revision History  

• Version 1.0: 2020-12-16
  Type: Initial release