7KCM

Full-length human mitochondrial Hsp90 (TRAP1) in complex with SdhB in the presence of AMP-PNP

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2020-10-06 Released: 2021-10-13 
  • Deposition Author(s): Liu, Y.X., Agard, D.A.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), American Heart Association, National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Cancer Institute (NIH/NCI), National Institutes of Health/National Institute of Mental Health (NIH/NIMH), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Cryo-EM reveals the dynamic interplay between mitochondrial Hsp90 and SdhB folding intermediates

Liu, Y.X., Agard, D.A., Elnatan, D., Sun, M., Myasnikov, A.G.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Heat shock protein 75 kDa, mitochondrialA, B651Homo sapiensMutation(s): 0 
Gene Names: TRAP1, HSP75
UniProt & NIH Common Fund Data Resources
Find proteins for Q12931 (Homo sapiens)
Explore Q12931 
Go to UniProtKB:  Q12931
PHAROS:  Q12931
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12931
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrialC134Homo sapiensMutation(s): 0 
Gene Names: SDHB, SDH, SDH1
EC: 1.3.5.1
UniProt & NIH Common Fund Data Resources
Find proteins for P21912 (Homo sapiens)
Explore P21912 
Go to UniProtKB:  P21912
PHAROS:  P21912
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21912
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP
Download Ideal Coordinates CCD File 
D [auth A],
G [auth B]		PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N		 Ligand Interaction
FES
Query on FES
Download Ideal Coordinates CCD File 
J [auth C]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N		 Ligand Interaction
K
Query on K
Download Ideal Coordinates CCD File 
F [auth A],
I [auth B]		POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
E [auth A],
H [auth B]		MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2020-10-06 
  • Released Date: 2021-10-13 
    • Deposition Author(s): Liu, Y.X., Agard, D.A.
Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
American Heart AssociationUnited States18POST33990362
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM118099
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesU54CA209891
National Institutes of Health/National Institute of Mental Health (NIH/NIMH)United StatesU01MH115747
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19AI135990

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-13
    Type: Initial release