7JT9

Fgr SH3 domain crystal structure

  • Classification: ONCOPROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): No 

  • Deposited: 2020-08-17 Released: 2022-01-26 
  • Deposition Author(s): Perez, I., Berndt, S., Gurevich, V.V., Iverson, T.M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA), National Institutes of Health/National Eye Institute (NIH/NEI)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Model for the Signal Initiation Complex Between Arrestin-3 and the Src Family Kinase Fgr.

Perez, I.Berndt, S.Agarwal, R.Castro, M.A.Vishnivetskiy, S.A.Smith, J.C.Sanders, C.R.Gurevich, V.V.Iverson, T.M.

(2022) J Mol Biol 434: 167400-167400

  • DOI: https://doi.org/10.1016/j.jmb.2021.167400
  • Primary Citation of Related Structures:  
    7JT9

  • PubMed Abstract: 

    Arrestins regulate a wide range of signaling events, most notably when bound to active G protein-coupled receptors (GPCRs). Among the known effectors recruited by GPCR-bound arrestins are Src family kinases, which regulate cellular growth and proliferation. Here, we focus on arrestin-3 interactions with Fgr kinase, a member of the Src family. Previous reports demonstrated that Fgr exhibits high constitutive activity, but can be further activated by both arrestin-dependent and arrestin-independent pathways. We report that arrestin-3 modulates Fgr activity with a hallmark bell-shaped concentration-dependence, consistent with a role as a signaling scaffold. We further demonstrate using NMR spectroscopy that a polyproline motif within arrestin-3 interacts directly with the SH3 domain of Fgr. To provide a framework for this interaction, we determined the crystal structure of the Fgr SH3 domain at 1.9 Å resolution and developed a model for the GPCR-arrestin-3-Fgr complex that is supported by mutagenesis. This model suggests that Fgr interacts with arrestin-3 at multiple sites and is consistent with the locations of disease-associated Fgr mutations. Collectively, these studies provide a structural framework for arrestin-dependent activation of Fgr.


  • Organizational Affiliation

    Department of Biochemistry, Vanderbilt University, Nashville, TN 37232-0146, USA; Center for Structural Biology, Nashville, TN 37232-0146, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tyrosine-protein kinase Fgr71Homo sapiensMutation(s): 0 
Gene Names: FGRSRC2
UniProt & NIH Common Fund Data Resources
Find proteins for P09769 (Homo sapiens)
Explore P09769 
Go to UniProtKB:  P09769
PHAROS:  P09769
GTEx:  ENSG00000000938 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09769
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.189 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 35.553α = 90
b = 53.287β = 90
c = 67.483γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM120569
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesR21 DA043680
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR01 EY011500
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35 GM122491
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2T32GM008320-31

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-26
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description