7EZO | pdb_00007ezo

GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569

PDB DOI: https://doi.org/10.2210/pdb7EZO/pdb

Classification: HYDROLASE
Organism(s): Bacillus sp. (in: firmicutes)
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-06-01 Released: 2022-07-13
Deposition Author(s): Wang, C.Y., Liu, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.285 (Depositor), 0.276 (DCC)
R-Value Work:
0.248 (Depositor), 0.247 (DCC)
R-Value Observed:
0.250 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569

Wang, C.Y., Liu, D.

To be published.

Macromolecule Content

Total Structure Weight: 39.22 kDa
Atom Count: 2,421
Modeled Residue Count: 312
Deposited Residue Count: 338
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endoxylanase/arabinofuranosidase	A	338	Bacillus sp. (in: firmicutes)	Mutation(s): 0 EC: 3.2.1.8
UniProt
Find proteins for A0A4V1YVU7 (Bacteroides intestinalis) Explore A0A4V1YVU7 Go to UniProtKB: A0A4V1YVU7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A4V1YVU7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.285 (Depositor), 0.276 (DCC)
R-Value Work: 0.248 (Depositor), 0.247 (DCC)
R-Value Observed: 0.250 (Depositor)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.199	α = 90
b = 70.199	β = 90
c = 106.879	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection