7EZO | pdb_00007ezo

GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569

• PDB DOI: https://doi.org/10.2210/pdb7EZO/pdb

• Classification: HYDROLASE
• Organism(s): Bacillus sp. (in: firmicutes)
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-06-01 Released: 2022-07-13 
• Deposition Author(s): Wang, C.Y., Liu, D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 
  0.285 (Depositor), 0.276 (DCC) 
• R-Value Work: 
  0.248 (Depositor), 0.247 (DCC) 
• R-Value Observed: 
  0.250 (Depositor) 

Literature

GH10 domain of bifunctional endoxylanase and arabinofuranosidase of Bi0569

Wang, C.Y., Liu, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: assay for oligomerization

Macromolecule Content 

• Total Structure Weight: 39.22 kDa 
• Atom Count: 2,421 
• Modeled Residue Count: 312 
• Deposited Residue Count: 338 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endoxylanase/arabinofuranosidase	A	338	Bacillus sp. (in: firmicutes)	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free:  0.285 (Depositor), 0.276 (DCC) 
• R-Value Work:  0.248 (Depositor), 0.247 (DCC) 
• R-Value Observed: 0.250 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.199	α = 90
b = 70.199	β = 90
c = 106.879	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-07-13 
Deposition Author(s): Wang, C.Y., Liu, D.

Revision History  

• Version 1.0: 2022-07-13
  Type: Initial release
  
• Version 1.1: 2024-05-29
  Changes: Data collection