7EN4

Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.

• PDB DOI: https://doi.org/10.2210/pdb7EN4/pdb

• Classification: HYDROLASE
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-04-15 Released: 2022-04-20 
• Deposition Author(s): Okada, M., Tateishi, Y., Nojiri, E., Mikawa, T., Rajesh, S., Ogasawa, H., Ueda, T., Yagi, H., Kohno, T., Kigawa, T., Shimada, I., Guentert, P., Yutaka, I., Ikeya, T.
• Funding Organization(s): Japan Science and Technology, Japan Society for the Promotion of Science (JSPS)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures randomly selected from each of five clusters 

Literature

Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.

Okada, M., Tateishi, Y., Nojiri, E., Mikawa, T., Rajesh, S., Yagi, H., Ogasawa, H., Ueda, T., Shimada, I., Kohno, T., Kigawa, T., Guentert, P., Yutaka, I., Ikeya, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 26.41 kDa 
• Atom Count: 1,861 
• Modelled Residue Count: 236 
• Deposited Residue Count: 236 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin carboxyl-terminal hydrolase YUH1	A	236	Saccharomyces cerevisiae	Mutation(s): 0  EC: 3.4.19.12
UniProt
Find proteins for P35127 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35127  Go to UniProtKB:  P35127

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures randomly selected from each of five clusters 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-04-20 
Deposition Author(s): Okada, M., Tateishi, Y., Nojiri, E., Mikawa, T., Rajesh, S., Ogasawa, H., Ueda, T., Yagi, H., Kohno, T., Kigawa, T., Shimada, I., Guentert, P., Yutaka, I., Ikeya, T.

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Funding Organization	Location	Grant Number
Japan Science and Technology	Japan	JPMJCR13M3
Japan Society for the Promotion of Science (JSPS)	Japan	JP15K06979, JP17K07312, JP19H05645, JP26102538, JP25120003, JP16H00779, JP15H01645, JP16H00847, JP17H05887,JP19H05773

Revision History  

• Version 1.0: 2022-04-20
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Other