7ELH

In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins.

Pan, M.Alvarez-Cabrera, A.L.Kang, J.S.Wang, L.Fan, C.Zhou, Z.H.

(2021) Nat Commun 12: 4176-4176

  • DOI: https://doi.org/10.1038/s41467-021-24455-4
  • Primary Citation of Related Structures:  
    7ELH, 7ELL

  • PubMed Abstract: 

    Mammalian reovirus (MRV) is the prototypical member of genus Orthoreovirus of family Reoviridae. However, lacking high-resolution structures of its RNA polymerase cofactor μ2 and infectious particle, limits understanding of molecular interactions among proteins and RNA, and their contributions to virion assembly and RNA transcription. Here, we report the 3.3 Å-resolution asymmetric reconstruction of transcribing MRV and in situ atomic models of its capsid proteins, the asymmetrically attached RNA-dependent RNA polymerase (RdRp) λ3, and RdRp-bound nucleoside triphosphatase μ2 with a unique RNA-binding domain. We reveal molecular interactions among virion proteins and genomic and messenger RNA. Polymerase complexes in three Spinoreovirinae subfamily members are organized with different pseudo-D 3d symmetries to engage their highly diversified genomes. The above interactions and those between symmetry-mismatched receptor-binding σ1 trimers and RNA-capping λ2 pentamers balance competing needs of capsid assembly, external protein removal, and allosteric triggering of endogenous RNA transcription, before, during and after infection, respectively.


  • Organizational Affiliation

    CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Minor core protein mu2736Mammalian orthoreovirus 3Mutation(s): 0 
UniProt
Find proteins for Q6EDZ8 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  Q6EDZ8
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UniProt GroupQ6EDZ8
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase1,267Mammalian orthoreovirus 3Mutation(s): 0 
EC: 2.7.7.48
UniProt
Find proteins for A0A0B5CSU4 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  A0A0B5CSU4
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UniProt GroupA0A0B5CSU4
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Lambda 11,095Mammalian orthoreovirus 3Mutation(s): 0 
UniProt
Find proteins for F1ARN3 (Mammalian orthoreovirus 3)
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Go to UniProtKB:  F1ARN3
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UniProt GroupF1ARN3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Lambda 1E [auth e],
H [auth g],
K [auth i],
N [auth k],
Q [auth m]
180Mammalian orthoreovirus 3Mutation(s): 0 
UniProt
Find proteins for F1ARN3 (Mammalian orthoreovirus 3)
Explore F1ARN3 
Go to UniProtKB:  F1ARN3
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UniProt GroupF1ARN3
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Entity ID: 3
MoleculeChains LengthOrganismImage
transcript RNA4Mammalian orthoreovirus 3 Dearing
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Entity ID: 6
MoleculeChains LengthOrganismImage
RNA (60-MER)60Mammalian orthoreovirus 3 Dearing
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PO4 (Subject of Investigation/LOI)
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth A]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1S10RR23057
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1S10OD018111
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU24GM116792
National Science Foundation (NSF, United States)United StatesDBI-1338135
National Science Foundation (NSF, United States)United StatesDMR-1548924

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-20
    Type: Initial release