7ELH

In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF07925	e7elhB4	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: PF07925	ECOD (1.6)
B	PF07925	e7elhB2	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: PF07925	ECOD (1.6)
B	PF07925	e7elhB3	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal additional helical subdomain in reovirus polymerase lambda3	F: PF07925	ECOD (1.6)
B	PF07925	e7elhB1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: PF07925	ECOD (1.6)
D	PF22033	e7elhD1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF22033	ECOD (1.6)
G [auth F]	PF22033	e7elhF1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF22033	ECOD (1.6)
J [auth H]	PF22033	e7elhH1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF22033	ECOD (1.6)
M [auth J]	PF22033	e7elhJ1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF22033	ECOD (1.6)
P [auth L]	PF22033	e7elhL1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: PF22033	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Minor core protein mu2	structural molecule activity	-	host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle viral capsid virion component host cell cytoplasm
B	RNA-directed RNA polymerase	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding organic cyclic compound binding nucleic acid binding	viral genome replication viral process viral life cycle	viral nucleocapsid viral capsid virion component
C	transcript RNA	-	-	-
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	Lambda 1	hydrolase activity catalytic activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity	cellular biosynthetic process RNA metabolic process 7-methylguanosine RNA capping RNA capping mRNA processing nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process RNA processing 7-methylguanosine mRNA capping cellular metabolic process primary metabolic process gene expression cellular biosynthetic process RNA metabolic process 7-methylguanosine RNA capping RNA capping mRNA processing nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process RNA processing 7-methylguanosine mRNA capping cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process RNA 5'-end processing metabolic process cellular process macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	Lambda 1	hydrolase activity catalytic activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity	cellular biosynthetic process RNA metabolic process 7-methylguanosine RNA capping RNA capping mRNA processing nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process RNA processing 7-methylguanosine mRNA capping cellular metabolic process primary metabolic process gene expression cellular biosynthetic process RNA metabolic process 7-methylguanosine RNA capping RNA capping mRNA processing nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process RNA processing 7-methylguanosine mRNA capping cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process RNA 5'-end processing metabolic process cellular process macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid
S [auth N], T [auth O], U [auth P], V [auth Q], W [auth R], S [auth N], T [auth O], U [auth P], V [auth Q], W [auth R], X [auth S], Y [auth T], Z [auth U]	RNA (60-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012494	Reovirus minor core protein, Mu-2	Family
B	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
B	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
B	IPR012915	Reovirus RNA-dependent RNA polymerase lambda 3	Family
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	IPR013087	Zinc finger C2H2-type	Domain
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	IPR013087	Zinc finger C2H2-type	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.