7EJH

Crystal structure of KRED mutant-F147L/L153Q/Y190P/L199A/M205F/M206F and 2-hydroxyisoindoline-1,3-dione complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Photoinduced chemomimetic biocatalysis for enantioselective intermolecular radical conjugate addition

Huang, X.Feng, J.Cui, J.Jiang, G.Harrison, W.Zang, X.Zhou, J.Wang, B.Zhao, H.

(2022) Nat Catal 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase
A, B, C, D
253Lentilactobacillus kefiriMutation(s): 6 
Gene Names: adhRfabG3DNL43_05835LKE01_04370
EC: 1.1.1
UniProt
Find proteins for Q6WVP7 (Lentilactobacillus kefiri)
Explore Q6WVP7 
Go to UniProtKB:  Q6WVP7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6WVP7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAP (Subject of Investigation/LOI)
Query on NAP

Download Ideal Coordinates CCD File 
F [auth A],
H [auth B],
L [auth C],
N [auth D]
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
J66 (Subject of Investigation/LOI)
Query on J66

Download Ideal Coordinates CCD File 
G [auth A],
I [auth B],
M [auth C],
O [auth D]
2-oxidanylisoindole-1,3-dione
C8 H5 N O3
CFMZSMGAMPBRBE-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
E [auth A],
J [auth C],
K [auth C]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 131.079α = 90
b = 56.128β = 103.757
c = 129.036γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description