7EES | pdb_00007ees

NMR structure of the lasso peptide rubrivimycin

PDB DOI: https://doi.org/10.2210/pdb7EES/pdb
BMRB: 36414

Classification: TOXIN
Organism(s): Rubrivivax albus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-03-19 Released: 2022-03-23
Deposition Author(s): Xiu, H., Niu, X., Zhu, S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Insight into the biosynthesis of rubrivimycin provides new clue for the evolution of lasso peptides

Xiu, X., Niu, X., Zhu, S.

To be published.

Macromolecule Content

Total Structure Weight: 2.29 kDa
Atom Count: 159
Modeled Residue Count: 20
Deposited Residue Count: 20
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-THR-ILE-ASP-PRO-GLN-ASN-SER-GLU-GLU-HIS-PRO-VAL-LEU-SER-ARG-ARG-LEU-GLU-ASN	A	20	Rubrivivax albus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-03-23

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	21706005

Revision History (Full details and data files)

Version 1.0: 2022-03-23
Type: Initial release
Version 1.1: 2023-06-14
Changes: Other
Version 1.2: 2024-10-09
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.