7EES | pdb_00007ees

NMR structure of the lasso peptide rubrivimycin

• PDB DOI: https://doi.org/10.2210/pdb7EES/pdb
• BMRB: 36414

• Classification: TOXIN
• Organism(s): Rubrivivax albus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-03-19 Released: 2022-03-23 
• Deposition Author(s): Xiu, H., Niu, X., Zhu, S.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Insight into the biosynthesis of rubrivimycin provides new clue for the evolution of lasso peptides

Xiu, X., Niu, X., Zhu, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR relaxation study

Macromolecule Content 

• Total Structure Weight: 2.29 kDa 
• Atom Count: 159 
• Modeled Residue Count: 20 
• Deposited Residue Count: 20 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-THR-ILE-ASP-PRO-GLN-ASN-SER-GLU-GLU-HIS-PRO-VAL-LEU-SER-ARG-ARG-LEU-GLU-ASN	A	20	Rubrivivax albus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-03-23 
Deposition Author(s): Xiu, H., Niu, X., Zhu, S.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	21706005

Revision History  

• Version 1.0: 2022-03-23
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Other
• Version 1.2: 2024-10-09
  Changes: Data collection, Database references, Structure summary