7DUS | pdb_00007dus

Crystal structure of Mei2-RRM3 domain in S.pombe

PDB DOI: https://doi.org/10.2210/pdb7DUS/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-01-11 Released: 2021-07-07
Deposition Author(s): Wu, B.X., Xu, J.H., Ma, J.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.263 (Depositor), 0.260 (DCC)
R-Value Work:
0.215 (Depositor), 0.220 (DCC)
R-Value Observed:
0.218 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Mei2-RRM3 domain in S.pombe

Wu, B.X., Xu, J.H., Ma, J.B.

To be published.

Macromolecule Content

Total Structure Weight: 18.04 kDa
Atom Count: 1,115
Modeled Residue Count: 133
Deposited Residue Count: 153
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Meiosis protein mei2	A	153	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: mei2, SPAC27D7.03c
UniProt
Find proteins for P08965 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore P08965 Go to UniProtKB: P08965
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P08965
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CIT Query on CIT Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.263 (Depositor), 0.260 (DCC)
R-Value Work: 0.215 (Depositor), 0.220 (DCC)
R-Value Observed: 0.218 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.67	α = 90
b = 87.67	β = 90
c = 128.482	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
HKL2Map	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-07-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-07-07
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.