7DSL

Overall structure of the LAT1-4F2hc bound with JX-078


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanism of substrate transport and inhibition of the human heteromeric LAT1-4F2hc amino acid transporters

Yan, R.H.Li, Y.N.Zhang, Y.Y.Zhong, X.Y.Zhou, Q.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
4F2 cell-surface antigen heavy chainA647Homo sapiensMutation(s): 0 
Gene Names: SLC3A2hCG_2016598
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for J3KPF3 (Homo sapiens)
Explore J3KPF3 
Go to UniProtKB:  J3KPF3
GTEx:  ENSG00000168003 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupJ3KPF3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Large neutral amino acids transporter small subunit 1B527Homo sapiensMutation(s): 0 
Gene Names: SLC7A5CD98LCLAT1MPE16
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q01650 (Homo sapiens)
Explore Q01650 
Go to UniProtKB:  Q01650
PHAROS:  Q01650
GTEx:  ENSG00000103257 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ01650
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 3
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseC, D, E, F 2N-Glycosylation Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3PH (Subject of Investigation/LOI)
Query on 3PH

Download Ideal Coordinates CCD File 
G [auth A]1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
C39 H77 O8 P
YFWHNAWEOZTIPI-DIPNUNPCSA-N
 Ligand Interaction
Y01
Query on Y01

Download Ideal Coordinates CCD File 
I [auth B],
J [auth B]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
 Ligand Interaction
HO0 (Subject of Investigation/LOI)
Query on HO0

Download Ideal Coordinates CCD File 
H [auth B](2~{S})-2-azanyl-7-[(2-phenylphenyl)methoxy]-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid
C24 H23 N O3
WYFYXQDJHCIQGH-DEOSSOPVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31971123
National Natural Science Foundation of China (NSFC)China81920108015
National Natural Science Foundation of China (NSFC)China31930059

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-10
    Type: Initial release