7DSN
Overall structure of the LAT1-4F2hc bound with JX-119
- PDB DOI: https://doi.org/10.2210/pdb7DSN/pdb
- EM Map EMD-30839: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No
- Membrane Protein: Yes OPMPDBTMMemProtMDmpstruc
- Deposited: 2020-12-31 Released: 2021-03-10
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.10 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4F2 cell-surface antigen heavy chain | 647 | Homo sapiens | Mutation(s): 0 Gene Names: SLC3A2, hCG_2016598 Membrane Entity: Yes |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08195 (Homo sapiens) Explore P08195 Go to UniProtKB: P08195 | |||||
PHAROS: P08195 GTEx: ENSG00000168003 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08195 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large neutral amino acids transporter small subunit 1 | 527 | Homo sapiens | Mutation(s): 0 Gene Names: SLC7A5, CD98LC, LAT1, MPE16 Membrane Entity: Yes |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q01650 (Homo sapiens) Explore Q01650 Go to UniProtKB: Q01650 | |||||
PHAROS: Q01650 GTEx: ENSG00000103257 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q01650 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3PH (Subject of Investigation/LOI) Query on 3PH | G [auth A] | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE C39 H77 O8 P YFWHNAWEOZTIPI-DIPNUNPCSA-N |  | ||
| Y01 Query on Y01 | I [auth B], J [auth B] | CHOLESTEROL HEMISUCCINATE C31 H50 O4 WLNARFZDISHUGS-MIXBDBMTSA-N |  | ||
| HO9 (Subject of Investigation/LOI) Query on HO9 | H [auth B] | (2~{S})-2-azanyl-7-[[2-(1,3-benzoxazol-2-yl)phenyl]methoxy]-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid C25 H22 N2 O4 FHPWRLVLBMWONR-VWLOTQADSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.10 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | RELION | 3.0.6 |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-03-10 Deposition Author(s): Yan, R.H., Li, Y.N., Zhang, Y.Y., Zhong, X.Y., Zhou, Q.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 31971123 |
| National Natural Science Foundation of China (NSFC) | China | 81920108015 |
| National Natural Science Foundation of China (NSFC) | China | 31930059 |
Revision History (Full details and data files)
- Version 1.0: 2021-03-10
Type: Initial release - Version 1.1: 2022-06-29
Changes: Database references
