7CYW

Crystal structure of a flavonoid C-glucosyltrasferase from Fagopyrum esculentum (FeCGTa) complexed with BrUTP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report



Literature

Crystal structure of a flavonoid C-glucosyltrasferase from Fagopyrum esculentum

Koyanagi, Y.Arai, R.Taguchi, G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
UDP-glycosyltransferase 708C1A443Fagopyrum esculentumMutation(s): 0 
Gene Names: UGT708C1CGTa
EC: 2.4.1
Find proteins for A0A0A1HA03 (Fagopyrum esculentum)
Explore A0A0A1HA03 
Go to UniProtKB:  A0A0A1HA03
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BUP
Query on BUP

Download CCD File 
A
5-bromouridine 5'-(tetrahydrogen triphosphate)
C9 H14 Br N2 O15 P3
IWFHOSULCAJGRM-UAKXSSHOSA-N
 Ligand Interaction
ACT
Query on ACT

Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.565α = 90
b = 76.01β = 90
c = 93.194γ = 90
Software Package:
Software NamePurpose
DENZOdata collection
HKL-2000data reduction
SCALEPACKdata scaling
MR-Rosettaphasing
Cootmodel building
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanJP26450120
Japan Society for the Promotion of Science (JSPS)JapanJP20K05825
Japan Society for the Promotion of Science (JSPS)JapanJP24780097
Japan Society for the Promotion of Science (JSPS)JapanJP16K05841

Revision History 

  • Version 1.0: 2020-09-23
    Type: Initial release