7CWP | pdb_00007cwp

Root induced Secreted protein Tsp1 from Biocontrol fungi Trichoderma virens

PDB DOI: https://doi.org/10.2210/pdb7CWP/pdb

Classification: SIGNALING PROTEIN
Organism(s): Trichoderma virens Gv29-8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-08-29 Released: 2021-09-01
Deposition Author(s): Gupta, G.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.226 (Depositor), 0.230 (DCC)
R-Value Work:
0.176 (Depositor), 0.180 (DCC)
R-Value Observed:
0.178 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of root induced Secreted protein Tsp1 from Biocontrol fungi Trichoderma virens

Gupta, G.D.

To be published.

Macromolecule Content

Total Structure Weight: 58.83 kDa
Atom Count: 4,268
Modeled Residue Count: 511
Deposited Residue Count: 552
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Root induced signalling protein	A, B, C, D	138	Trichoderma virens Gv29-8	Mutation(s): 0 Gene Names: TRIVIDRAFT_215947
UniProt
Find proteins for G9MQD3 (Hypocrea virens (strain Gv29-8 / FGSC 10586)) Explore G9MQD3 Go to UniProtKB: G9MQD3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G9MQD3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.226 (Depositor), 0.230 (DCC)
R-Value Work: 0.176 (Depositor), 0.180 (DCC)
R-Value Observed: 0.178 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.2	α = 90
b = 66.7	β = 90
c = 168	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PDB_EXTRACT	data extraction
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-09-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-09-01
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.