7BZ6

Mycobacterium bovis AhpC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.309 
  • R-Value Observed: 0.311 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Residues of helix alpha2 are critical for catalytic efficiency of mycobacterial alkylhydroperoxide reductase subunit C.

Chong, S.M.S.Kamariah, N.Gruber, G.

(2020) FEBS Lett 594: 2829-2839

  • DOI: https://doi.org/10.1002/1873-3468.13864
  • Primary Citation of Related Structures:  
    7BZ6

  • PubMed Abstract: 

    The ability of Mycobacteria to overcome oxidative stress is of paramount importance for its survival within the host. One of the key enzymes that are involved in protecting the bacterium from reactive oxygen species is the catalase-peroxidase (KatG). However, in strains resistant to the antibiotic isoniazid, KatG is rendered ineffective, which is associated with an increased expression of alkylhydroperoxide reductase subunit C (AhpC). Mycobacterial AhpC possesses a unique helical displacement when compared to its bacterial counterparts. Here, via mutagenesis studies, we demonstrate the importance of this helix for redox modulation of the catalytic activity of AhpC. Along with structural insights from crystallographic data, the impact of critical residues on the structure and flexibility of the helix and on AhpC oligomerization is described.


  • Organizational Affiliation

    School of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alkyl hydroperoxide reductase C peptide
A, B
201Mycobacterium tuberculosis variant bovisMutation(s): 2 
Gene Names: ahpC
UniProt
Find proteins for Q79CV0 (Mycobacterium bovis)
Explore Q79CV0 
Go to UniProtKB:  Q79CV0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ79CV0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.309 
  • R-Value Observed: 0.311 
  • Space Group: P 6 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.554α = 90
b = 137.554β = 90
c = 96.842γ = 120
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-10
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Database references, Refinement description