Download MendeleyStructure of echovirus 18 in complex with neonatal Fc receptor
Buchta, D., Levdansky, Y., Fuzik, T., Mukhamedova, L., Moravcova, J., Hrebik, D., Andersen, J.T., Plevka, P.To be published.
7B5F
Structure of echovirus 18 in complex with neonatal Fc receptor
- PDB DOI: https://doi.org/10.2210/pdb7B5F/pdb
- EM Map EMD-12028: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Echovirus E18, Homo sapiens
- Expression System: unidentified baculovirus
- Mutation(s): No
- Deposited: 2020-12-03 Released: 2022-01-12
- Funding Organization(s): Grant Agency of the Czech Republic
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.90 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Echovirus 18 viral protein 3 | A [auth C] | 239 | Echovirus E18 | Mutation(s): 0 EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data) |  |
UniProt | |||||
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635 Go to UniProtKB: Q8V635 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8V635 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Echovirus 18 viral protein 4 | B [auth D] | 69 | Echovirus E18 | Mutation(s): 0 EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data) |  |
UniProt | |||||
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635 Go to UniProtKB: Q8V635 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8V635 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Echovirus 18 viral protein 1 | C [auth A] | 287 | Echovirus E18 | Mutation(s): 0 EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data) |  |
UniProt | |||||
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635 Go to UniProtKB: Q8V635 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8V635 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Echovirus 18 viral protein 2 | D [auth B] | 260 | Echovirus E18 | Mutation(s): 0 EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data) |  |
UniProt | |||||
Find proteins for Q8V635 (Echovirus E18) Explore Q8V635 Go to UniProtKB: Q8V635 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8V635 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| IgG receptor FcRn large subunit p51 | E [auth G] | 267 | Homo sapiens | Mutation(s): 0 Gene Names: FCGRT, FCRN |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P55899 (Homo sapiens) Explore P55899 Go to UniProtKB: P55899 | |||||
PHAROS: P55899 GTEx: ENSG00000104870 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P55899 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | F [auth H] | 99 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
PHAROS: P61769 GTEx: ENSG00000166710 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLM (Subject of Investigation/LOI) Query on PLM | G [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |  | ||
| GUN Query on GUN | H [auth B] | GUANINE C5 H5 N5 O UYTPUPDQBNUYGX-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.90 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | RELION | 3 |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-01-12 Deposition Author(s): Buchta, D., Levdansky, Y., Fuzik, T., Mukhamedova, L., Moravcova, J., Hrebik, D., Andersen, J.T., Plevka, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Grant Agency of the Czech Republic | Czech Republic | GX19-25982X |
Revision History (Full details and data files)
- Version 1.0: 2022-01-12
Type: Initial release
