7APE

Crystal structure of LpqY from Mycobacterium thermoresistible in complex with trehalose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.170 

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This is version 1.1 of the entry. See complete history


Literature

Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter.

Furze, C.M.Delso, I.Casal, E.Guy, C.S.Seddon, C.Brown, C.M.Parker, H.L.Radhakrishnan, A.Pacheco-Gomez, R.Stansfeld, P.J.Angulo, J.Cameron, A.D.Fullam, E.

(2021) J Biol Chem 296: 100307-100307

  • DOI: https://doi.org/10.1016/j.jbc.2021.100307
  • Primary Citation of Related Structures:  
    7APE

  • PubMed Abstract: 

    The Mycobacterium tuberculosis (Mtb) LpqY-SugABC ATP-binding cassette transporter is a recycling system that imports trehalose released during remodeling of the Mtb cell-envelope. As this process is essential for the virulence of the Mtb pathogen, it may represent an important target for tuberculosis drug and diagnostic development, but the transporter specificity and molecular determinants of substrate recognition are unknown. To address this, we have determined the structural and biochemical basis of how mycobacteria transport trehalose using a combination of crystallography, saturation transfer difference NMR, molecular dynamics, site-directed mutagenesis, biochemical/biophysical assays, and the synthesis of trehalose analogs. This analysis pinpoints key residues of the LpqY substrate binding lipoprotein that dictate substrate-specific recognition and has revealed which disaccharide modifications are tolerated. These findings provide critical insights into how the essential Mtb LpqY-SugABC transporter reuses trehalose and modified analogs and specifies a framework that can be exploited for the design of new antitubercular agents and/or diagnostic tools.


  • Organizational Affiliation

    School of Life Sciences, University of Warwick, Coventry, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lipoprotein (Sugar-binding) lpqY
A, B
451Mycolicibacterium thermoresistibileMutation(s): 0 
Gene Names: RMCT_2827
UniProt
Find proteins for G7CES0 (Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316))
Explore G7CES0 
Go to UniProtKB:  G7CES0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG7CES0
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
C, D
2N/A
Glycosylation Resources
GlyTouCan:  G92130SN
GlyCosmos:  G92130SN
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.170 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.361α = 90
b = 92.361β = 90
c = 216.577γ = 90
Software Package:
Software NamePurpose
PHASERphasing
XDSdata scaling
XDSdata reduction
PHENIXrefinement
Cootmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom104193/Z/14/Z
Wellcome TrustUnited Kingdom104193/Z/14/B
Royal SocietyUnited Kingdom104193/Z/14/Z
Royal SocietyUnited Kingdom104193/Z/14/B

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-28
    Type: Initial release
  • Version 1.1: 2021-07-21
    Changes: Database references