7ANE

Leishmania Major mitochondrial ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.

Soufari, H.Waltz, F.Parrot, C.Durrieu-Gaillard, S.Bochler, A.Kuhn, L.Sissler, M.Hashem, Y.

(2020) Proc Natl Acad Sci U S A 117: 29851-29861

  • DOI: 10.1073/pnas.2011301117
  • Primary Citation of Related Structures:  
    7AIH, 7AM2, 7ANE, 7AOR

  • PubMed Abstract: 
  • Kinetoplastids are unicellular eukaryotic parasites responsible for such human pathologies as Chagas disease, sleeping sickness, and leishmaniasis. They have a single large mitochondrion, essential for the parasite survival. In kinetoplastid mitochondria, most of the molecular machineries and gene expression processes have significantly diverged and specialized, with an extreme example being their mitochondrial ribosomes ...

    Kinetoplastids are unicellular eukaryotic parasites responsible for such human pathologies as Chagas disease, sleeping sickness, and leishmaniasis. They have a single large mitochondrion, essential for the parasite survival. In kinetoplastid mitochondria, most of the molecular machineries and gene expression processes have significantly diverged and specialized, with an extreme example being their mitochondrial ribosomes. These large complexes are in charge of translating the few essential mRNAs encoded by mitochondrial genomes. Structural studies performed in Trypanosoma brucei already highlighted the numerous peculiarities of these mitoribosomes and the maturation of their small subunit. However, several important aspects mainly related to the large subunit (LSU) remain elusive, such as the structure and maturation of its ribosomal RNA. Here we present a cryo-electron microscopy study of the protozoans Leishmania tarentolae and Trypanosoma cruzi mitoribosomes. For both species, we obtained the structure of their mature mitoribosomes, complete rRNA of the LSU, as well as previously unidentified ribosomal proteins. In addition, we introduce the structure of an LSU assembly intermediate in the presence of 16 identified maturation factors. These maturation factors act on both the intersubunit and the solvent sides of the LSU, where they refold and chemically modify the rRNA and prevent early translation before full maturation of the LSU.


    Organizational Affiliation

    Institut Européen de Chimie et Biologie, U1212 INSERM, UMR5320 CNRS, Université de Bordeaux, F-33600 Pessac, France; m.sissler@iecb.u-bordeaux.fr yaser.hashem@inserm.fr.



Macromolecules

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
uS14mB [auth h]166Leishmania majorMutation(s): 0 
Gene Names: LMJF_07_0450
UniProt
Find proteins for Q4QIP8 (Leishmania major)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
mS69C [auth aw]139Leishmania majorMutation(s): 0 
Gene Names: LMJF_10_1120
UniProt
Find proteins for Q4QHA2 (Leishmania major)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
bS18mD [auth m]325Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_2310
UniProt
Find proteins for Q4Q1J0 (Leishmania major)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
uS11mE [auth f]371Leishmania majorMutation(s): 0 
Gene Names: LMJF_05_0340
UniProt
Find proteins for Q4QJG8 (Leishmania major)
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
mS33F [auth s]179Leishmania majorMutation(s): 0 
Gene Names: LMJF_27_0180
UniProt
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Rhodanese domain-containing proteinG [auth au]247Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_3530
UniProt
Find proteins for Q4Q6T5 (Leishmania major)
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
mS59H [auth am]313Leishmania majorMutation(s): 0 
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
uS19mI [auth n]171Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_0740
UniProt
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
mS53J [auth ae]655Leishmania majorMutation(s): 0 
Gene Names: LMJF_15_0780
UniProt
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
mS71K [auth ay]169Leishmania majorMutation(s): 0 
Gene Names: LMJF_28_2980
UniProt
Find proteins for Q4Q7W4 (Leishmania major)
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
mS55L [auth ag]564Leishmania majorMutation(s): 0 
Gene Names: LMJF_29_0430
UniProt
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
mS57M [auth aj]397Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_0650
UniProt
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
uS10mN [auth e]822Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_0010
UniProt
Find proteins for Q4Q4M2 (Leishmania major)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
uS9mO [auth d]351Leishmania majorMutation(s): 0 
Gene Names: LMJF_23_1190
UniProt
Find proteins for Q4QB37 (Leishmania major)
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
mS72P [auth az]163Leishmania majorMutation(s): 0 
Gene Names: LMJF_22_1220
UniProt
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
mS70Q [auth ax]184Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_4120
UniProt
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
mS29R [auth r]467Leishmania majorMutation(s): 0 
Gene Names: LMJF_12_0040
UniProt
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
Excreted/secreted protein 15S [auth af]835Leishmania majorMutation(s): 0 
UniProt
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
mS35T [auth u]890Leishmania majorMutation(s): 0 
Gene Names: LMJF_27_0630
UniProt
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
mS48U [auth aa]1813Leishmania majorMutation(s): 0 
Gene Names: LMJF_16_1230
UniProt
Find proteins for Q4QEP4 (Leishmania major)
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
mS49V [auth ab]1177Leishmania majorMutation(s): 0 
Gene Names: LMJF_27_1895
UniProt
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
mS58W [auth ak]325Leishmania majorMutation(s): 0 
Gene Names: LMJF_03_0630
UniProt
Find proteins for E9ACK8 (Leishmania major)
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
mS50X [auth ac]1267Leishmania majorMutation(s): 0 
Gene Names: LMJF_22_0990
UniProt
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
mS51Y [auth ad]811Leishmania majorMutation(s): 0 
Gene Names: LMJF_24_0830
UniProt
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
mS60Z [auth an]302Leishmania majorMutation(s): 0 
Gene Names: LMJF_22_0710LMJF_22_0830
UniProt
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
mS61AA [auth ao]291Leishmania majorMutation(s): 0 
Gene Names: LMJF_35_2230
UniProt
Find proteins for E9AF47 (Leishmania major)
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
mS62BA [auth ap]245Leishmania majorMutation(s): 0 
Gene Names: LMJF_28_2180
UniProt
Find proteins for Q4Q847 (Leishmania major)
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
mS63CA [auth aq]295Leishmania majorMutation(s): 0 
Gene Names: LMJF_15_1400
UniProt
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
mS65DA [auth as]270Leishmania majorMutation(s): 0 
Gene Names: LMJF_08_0120
UniProt
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
mS66EA [auth at]397Leishmania majorMutation(s): 0 
Gene Names: LMJF_18_0320
UniProt
Find proteins for Q4QE10 (Leishmania major)
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
mS43FA [auth y]485Leishmania majorMutation(s): 0 
Gene Names: LMJF_34_0720
UniProt
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
Protein FYV4, mitochondrialGA [auth w]190Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_0600
UniProt
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
mS37HA [auth v]214Leishmania majorMutation(s): 0 
Gene Names: LMJF_21_0827
UniProt
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
mS34IA [auth t]267Leishmania majorMutation(s): 0 
Gene Names: LMJF_26_2270
UniProt
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
mS23JA [auth p]321Leishmania majorMutation(s): 0 
Gene Names: LMJF_15_0080
UniProt
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
bS16mKA [auth j]189Leishmania majorMutation(s): 0 
Gene Names: LMJF_28_0920
UniProt
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
mS52LA [auth l]677Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_2510
UniProt
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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
AKAP7_NLS domain-containing proteinMA [auth ar]282Leishmania majorMutation(s): 0 
Gene Names: LMJF_32_0650
UniProt
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-like domain-containing proteinNA [auth av]236Leishmania majorMutation(s): 0 
Gene Names: LMJF_25_2160
UniProt
Find proteins for Q4Q9M1 (Leishmania major)
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
mS56OA [auth ai]379Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_3220
UniProt
Find proteins for Q4Q6W8 (Leishmania major)
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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
Putative superoxide dismutasePA [auth x]268Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_2770
EC: 1.15.1.1
UniProt
Find proteins for Q4Q716 (Leishmania major)
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
uS15mQA [auth i]429Leishmania majorMutation(s): 0 
Gene Names: LMJF_20_0510
UniProt
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
bS21mRA [auth g]192Leishmania majorMutation(s): 0 
Gene Names: LMJF_29_1540
UniProt
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
mS22SA [auth o]604Leishmania majorMutation(s): 0 
Gene Names: LMJF_35_3940
UniProt
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
uS8mTA [auth c]311Leishmania majorMutation(s): 0 
Gene Names: LMJF_18_0800
UniProt
Find proteins for Q4QDW2 (Leishmania major)
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
30S Ribosomal protein S17-like proteinUA [auth k]312Leishmania majorMutation(s): 0 
Gene Names: LMJF_35_3850
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
mS26VA [auth q]425Leishmania majorMutation(s): 0 
Gene Names: LMJF_35_3490
UniProt
Find proteins for E9AFH3 (Leishmania major)
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
bS6mWA [auth b]159Leishmania majorMutation(s): 0 
Gene Names: LMJF_34_0400
UniProt
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal_S5_C domain-containing proteinXA [auth a]431Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_1860
UniProt
Find proteins for Q4Q1N8 (Leishmania major)
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
mS73YA [auth ba]94Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_3235
UniProt
Find proteins for Q4Q6W6 (Leishmania major)
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
mS47ZA [auth z]1169Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_3280
UniProt
Find proteins for Q4Q190 (Leishmania major)
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
uS3mAB [auth bd]89Leishmania majorMutation(s): 0 
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Entity ID: 54
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein L3-like proteinBB [auth A]466Leishmania majorMutation(s): 0 
Gene Names: LMJF_29_0030
UniProt
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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
uL4mCB [auth B]435Leishmania majorMutation(s): 0 
Gene Names: LMJF_11_1360
UniProt
Find proteins for Q4QGU6 (Leishmania major)
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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
RIBOSOMAL_L9 domain-containing proteinDB [auth C]261Leishmania majorMutation(s): 0 
Gene Names: LMJF_08_0240
UniProt
Find proteins for Q4QIE5 (Leishmania major)
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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
uL10mEB [auth D]204Leishmania majorMutation(s): 0 
Gene Names: LMJF_08_0920
UniProt
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
Putative ribosomal protein L11FB [auth E]345Leishmania majorMutation(s): 0 
Gene Names: LMJF_27_2220
UniProt
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Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13-like proteinGB [auth F]171Leishmania majorMutation(s): 0 
Gene Names: LMJF_34_3680
UniProt
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Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal_L18e/L15P domain-containing proteinHB [auth G]373Leishmania majorMutation(s): 0 
Gene Names: LMJF_16_0010
UniProt
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Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal_L16 domain-containing proteinIB [auth H]167Leishmania majorMutation(s): 0 
Gene Names: LMJF_14_0950
UniProt
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Entity ID: 62
MoleculeChainsSequence LengthOrganismDetailsImage
Putative 50S ribosomal protein L17JB [auth I]304Leishmania majorMutation(s): 0 
Gene Names: LMJF_16_0160
UniProt
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Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
bL19mKB [auth J]143Leishmania majorMutation(s): 0 
Gene Names: LMJF_20_0530
UniProt
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Entity ID: 64
MoleculeChainsSequence LengthOrganismDetailsImage
bL20mLB [auth K]193Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_3260
UniProt
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Entity ID: 65
MoleculeChainsSequence LengthOrganismDetailsImage
bL21mMB [auth L]185Leishmania majorMutation(s): 0 
Gene Names: LMJF_14_0780
UniProt
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Entity ID: 66
MoleculeChainsSequence LengthOrganismDetailsImage
uL22mNB [auth M]278Leishmania majorMutation(s): 0 
Gene Names: LMJF_22_0870
UniProt
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Entity ID: 67
MoleculeChainsSequence LengthOrganismDetailsImage
uL23mOB [auth N]251Leishmania majorMutation(s): 0 
Gene Names: LMJF_25_0890
UniProt
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Entity ID: 68
MoleculeChainsSequence LengthOrganismDetailsImage
uL24mPB [auth O]475Leishmania majorMutation(s): 0 
Gene Names: LMJF_25_1640
UniProt
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Entity ID: 69
MoleculeChainsSequence LengthOrganismDetailsImage
bL27mQB [auth P]184Leishmania majorMutation(s): 0 
Gene Names: LMJF_13_1200
UniProt
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Entity ID: 70
MoleculeChainsSequence LengthOrganismDetailsImage
bL28mRB [auth Q]233Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_2750
UniProt
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Entity ID: 71
MoleculeChainsSequence LengthOrganismDetailsImage
uL29mSB [auth R]479Leishmania majorMutation(s): 0 
Gene Names: LMJF_04_0270
UniProt
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Entity ID: 72
MoleculeChainsSequence LengthOrganismDetailsImage
uL30mTB [auth S]408Leishmania majorMutation(s): 0 
Gene Names: LMJF_04_0860
UniProt
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Entity ID: 73
MoleculeChainsSequence LengthOrganismDetailsImage
bL32mUB [auth T]82Leishmania majorMutation(s): 0 
Gene Names: LMJF_34_2310
UniProt
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Entity ID: 74
MoleculeChainsSequence LengthOrganismDetailsImage
bL33mVB [auth U]117Leishmania majorMutation(s): 0 
Gene Names: LMJF_34_2860
UniProt
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Entity ID: 75
MoleculeChainsSequence LengthOrganismDetailsImage
bL35mWB [auth V]150Leishmania majorMutation(s): 0 
Gene Names: LMJF_21_0100
UniProt
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Entity ID: 76
MoleculeChainsSequence LengthOrganismDetailsImage
bL36mXB [auth W]185Leishmania majorMutation(s): 0 
Gene Names: LMJF_31_1590
UniProt
Find proteins for Q4Q6A3 (Leishmania major)
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Entity ID: 77
MoleculeChainsSequence LengthOrganismDetailsImage
mL38YB [auth X]512Leishmania majorMutation(s): 0 
Gene Names: LMJF_32_1770
UniProt
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Entity ID: 78
MoleculeChainsSequence LengthOrganismDetailsImage
mL40ZB [auth Y]292Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_1390
UniProt
Find proteins for Q4Q448 (Leishmania major)
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Entity ID: 79
MoleculeChainsSequence LengthOrganismDetailsImage
mL41AC [auth Z]197Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_3653
UniProt
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Entity ID: 80
MoleculeChainsSequence LengthOrganismDetailsImage
mL94BC [auth BA]167Leishmania majorMutation(s): 0 
Gene Names: LMJF_04_0045
UniProt
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Entity ID: 81
MoleculeChainsSequence LengthOrganismDetailsImage
UACC [auth UA]203Leishmania majorMutation(s): 0 
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Entity ID: 82
MoleculeChainsSequence LengthOrganismDetailsImage
mL95DC [auth BB]156Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_0690
UniProt
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Entity ID: 83
MoleculeChainsSequence LengthOrganismDetailsImage
mL89EC [auth Aw]187Leishmania majorMutation(s): 0 
Gene Names: LMJF_27_0230
UniProt
Find proteins for E9AD00 (Leishmania major)
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Entity ID: 84
MoleculeChainsSequence LengthOrganismDetailsImage
bL31mFC [auth Bj]185Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_6190
UniProt
Find proteins for Q4Q0E1 (Leishmania major)
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Entity ID: 85
MoleculeChainsSequence LengthOrganismDetailsImage
mL76GC [auth An]331Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_6050
UniProt
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Entity ID: 86
MoleculeChainsSequence LengthOrganismDetailsImage
mL74HC [auth Al]346Leishmania majorMutation(s): 0 
Gene Names: LMJF_36_2910
UniProt
Find proteins for Q4Q1C8 (Leishmania major)
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Entity ID: 87
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomeraseIC [auth BI]266Leishmania majorMutation(s): 0 
Gene Names: CYP10LMJF_36_3130
EC: 5.2.1.8
UniProt
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Entity ID: 88
MoleculeChainsSequence LengthOrganismDetailsImage
mL93JC [auth Az]152Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_0660
UniProt
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Entity ID: 89
MoleculeChainsSequence LengthOrganismDetailsImage
mL86KC [auth At]183Leishmania majorMutation(s): 0 
Gene Names: LMJF_33_0080
UniProt
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Entity ID: 90
MoleculeChainsSequence LengthOrganismDetailsImage
mL96LC [auth BC]147Leishmania majorMutation(s): 0 
Gene Names: LMJF_32_1440
UniProt
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Entity ID: 91
MoleculeChainsSequence LengthOrganismDetailsImage
L51_S25_CI-B8 domain-containing proteinMC [auth Ab]262Leishmania majorMutation(s): 0 
Gene Names: LMJF_31_1550
UniProt
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Entity ID: 92
MoleculeChainsSequence LengthOrganismDetailsImage
mL69NC [auth Ai]479Leishmania majorMutation(s): 0 
Gene Names: LMJF_30_0580
UniProt
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Entity ID: 93
MoleculeChainsSequence LengthOrganismDetailsImage
mL80OC [auth Ap]240