7A5G

Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.33 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Elongational stalling activates mitoribosome-associated quality control.

Desai, N., Yang, H., Chandrasekaran, V., Kazi, R., Minczuk, M., Ramakrishnan, V.

(2020) Science 370: 1105-1110

  • DOI: https://doi.org/10.1126/science.abc7782
  • Primary Citation of Related Structures:  
    7A5F, 7A5G, 7A5H, 7A5I, 7A5J, 7A5K

  • PubMed Abstract: 

    The human mitochondrial ribosome (mitoribosome) and associated proteins regulate the synthesis of 13 essential subunits of the oxidative phosphorylation complexes. We report the discovery of a mitoribosome-associated quality control pathway that responds to interruptions during elongation, and we present structures at 3.1- to 3.3-angstrom resolution of mitoribosomal large subunits trapped during ribosome rescue. Release factor homolog C12orf65 (mtRF-R) and RNA binding protein C6orf203 (MTRES1) eject the nascent chain and peptidyl transfer RNA (tRNA), respectively, from stalled ribosomes. Recruitment of mitoribosome biogenesis factors to these quality control intermediates suggests additional roles for these factors during mitoribosome rescue. We also report related cryo-electron microscopy structures (3.7 to 4.4 angstrom resolution) of elongating mitoribosomes bound to tRNAs, nascent polypeptides, the guanosine triphosphatase elongation factors mtEF-Tu and mtEF-G1, and the Oxa1L translocase.

    • Organizational Affiliation: 

    MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
nascent chainA [auth Y2]29Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L2, mitochondrialD [auth D3]305Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112651 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L3, mitochondrialE [auth E3]348Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114686 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L4, mitochondrialF [auth F3]311Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105364 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L9, mitochondrialG [auth H3],
OC [auth D]		267Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143436 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L10, mitochondrialH [auth I3]261Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000159111 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L11, mitochondrialI [auth J3]192Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174547 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L13, mitochondrialJ [auth K3]178Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172172 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L14, mitochondrialK [auth L3]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000180992 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L15, mitochondrialL [auth M3]296Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137547 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L16, mitochondrialM [auth N3]251Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166902 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L17, mitochondrialN [auth O3]175Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000158042 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L18, mitochondrialO [auth P3]180Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112110 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L19, mitochondrialP [auth Q3]292Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115364 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L20, mitochondrialQ [auth R3]149Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000242485 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L21, mitochondrialR [auth S3]205Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197345 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L22, mitochondrialS [auth T3]206Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000082515 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L23, mitochondrialT [auth U3]153Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000214026 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L24, mitochondrialU [auth V3]216Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143314 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L27, mitochondrialV [auth W3]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108826 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L28, mitochondrialW [auth X3]256Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000086504 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L47, mitochondrialX [auth Y3]250Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136522 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L30, mitochondrialY [auth Z3]161Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000185414 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L32, mitochondrialZ [auth 03]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000106591 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L33, mitochondrialAA [auth 13]65Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000243147 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L34, mitochondrialBA [auth 23]92Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000130312 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L35, mitochondrialCA [auth 33]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000132313 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L36, mitochondrialDA [auth 43]103Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171421 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L37, mitochondrialEA [auth 53]423Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116221 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L38, mitochondrialFA [auth 63]380Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204316 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L39, mitochondrialGA [auth 73]338Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000154719 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L41, mitochondrialHA [auth 93]137Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182154 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L42, mitochondrialIA [auth a3]142Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198015 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L43, mitochondrialJA [auth b3]215Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000055950 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L44, mitochondrialKA [auth c3]332Homo sapiensMutation(s): 0 
EC: 3.1.26
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GTEx:  ENSG00000135900 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L45, mitochondrialLA [auth d3]306Homo sapiensMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L46, mitochondrialMA [auth e3]279Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000259494 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L48, mitochondrialNA [auth f3]212Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175581 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L49, mitochondrialOA [auth g3]166Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000149792 
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UniProt GroupQ13405
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L50, mitochondrialPA [auth h3]158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136897 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L51, mitochondrialQA [auth i3]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000111639 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L52, mitochondrialRA [auth j3]123Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172590 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L53, mitochondrialSA [auth k3]112Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204822 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L54, mitochondrialTA [auth l3]138Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000183617 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L55, mitochondrialUA [auth m3]128Homo sapiensMutation(s): 0 
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Find proteins for Q7Z7F7 (Homo sapiens)
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GTEx:  ENSG00000162910 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein 63, mitochondrialVA [auth o3]102Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000173141 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidyl-tRNA hydrolase ICT1, mitochondrialWA [auth p3]206Homo sapiensMutation(s): 0 
EC: 3.1.1.29
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GTEx:  ENSG00000167862 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Growth arrest and DNA damage-inducible proteins-interacting protein 1XA [auth q3]222Homo sapiensMutation(s): 0 
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Find proteins for Q8TAE8 (Homo sapiens)
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GTEx:  ENSG00000179271 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein S18a, mitochondrialYA [auth r3]196Homo sapiensMutation(s): 0 
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Find proteins for Q9NVS2 (Homo sapiens)
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GTEx:  ENSG00000096080 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein S30, mitochondrial,39S ribosomal protein S30, mitochondrial,mL65AB [auth t3],
ZA [auth s3]		467Homo sapiensMutation(s): 0 
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Find proteins for Q9NP92 (Homo sapiens)
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GTEx:  ENSG00000112996 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Oxa1L tailCB [auth A5]28Homo sapiensMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S2, mitochondrialDB [auth B6]296Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122140 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S24, mitochondrialEB [auth C6]167Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000062582 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S5, mitochondrialFB [auth D6]430Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000144029 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S6, mitochondrialGB [auth E6]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000243927 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S7, mitochondrialHB [auth F6]242Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000125445 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S9, mitochondrialIB [auth G6]396Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000135972 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S10, mitochondrialJB [auth H6]201Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000048544 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S11, mitochondrialKB [auth I6]194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000181991 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S12, mitochondrialLB [auth J6]138Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000128626 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S14, mitochondrialMB [auth K6]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000120333 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S15, mitochondrialNB [auth L6]257Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116898 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S16, mitochondrialOB [auth M6]137Homo sapiensMutation(s): 0 
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Find proteins for Q9Y3D3 (Homo sapiens)
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GTEx:  ENSG00000182180 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S17, mitochondrialPB [auth N6]130Homo sapiensMutation(s): 0 
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Find proteins for Q9Y2R5 (Homo sapiens)
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GTEx:  ENSG00000239789 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S18b, mitochondrialQB [auth O6]258Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204568 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S18c, mitochondrialRB [auth P6]142Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163319 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S21, mitochondrialSB [auth Q6]87Homo sapiensMutation(s): 0 
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Find proteins for P82921 (Homo sapiens)
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GTEx:  ENSG00000266472 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S22, mitochondrialTB [auth R6]360Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175110 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S23, mitochondrialUB [auth S6]190Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000181610 
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