7ZXJ

K563A Mutant of Recombinant CODH-II

PDB DOI: https://doi.org/10.2210/pdb7ZXJ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Carboxydothermus hydrogenoformans Z-2901
Expression System: Escherichia coli B
Mutation(s): Yes

Deposited: 2022-05-21 Released: 2023-03-15
Deposition Author(s): Basak, Y., Jeoung, J.H., Dobbek, H.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.171
R-Value Work: 0.137
R-Value Observed: 0.139

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix

Basak, Y., Jeoung, J.H., Domnik, L., Ruickoldt, J., Dobbek, H.

(2022) ACS Catal

DOI: https://doi.org/10.1021/acscatal.2c02922

Macromolecule Content

Total Structure Weight: 68.22 kDa
Atom Count: 5,987
Modelled Residue Count: 635
Deposited Residue Count: 636
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbon monoxide dehydrogenase 2	A [auth X]	636	Carboxydothermus hydrogenoformans Z-2901	Mutation(s): 1 Gene Names: cooS2, cooSII, CHY_0085 EC: 1.2.7.4
UniProt
Find proteins for Q9F8A8 (Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)) Explore Q9F8A8 Go to UniProtKB: Q9F8A8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9F8A8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
WCC (Subject of Investigation/LOI) Query on WCC Download Ideal Coordinates CCD File SDF format, chain D [auth X] MOL2 format, chain D [auth X]	D [auth X]	FE(3)-NI(1)-S(4) CLUSTER Fe₃ Ni S₄ SEEZYPKDPRYISB-UHFFFAOYSA-N		Interactions Focus chain D [auth X] Interactions & Density Focus chain D [auth X]
SF4 Query on SF4 Download Ideal Coordinates CCD File SDF format, chain B [auth X] MOL2 format, chain B [auth X]	B [auth X]	IRON/SULFUR CLUSTER Fe₄ S₄ LJBDFODJNLIPKO-UHFFFAOYSA-N		Interactions Focus chain B [auth X] Interactions & Density Focus chain B [auth X]
FES Query on FES Download Ideal Coordinates CCD File SDF format, chain C [auth X] MOL2 format, chain C [auth X]	C [auth X]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Interactions Focus chain C [auth X] Interactions & Density Focus chain C [auth X]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain F [auth X] SDF format, chain G [auth X] SDF format, chain H [auth X] MOL2 format, chain F [auth X] MOL2 format, chain G [auth X] MOL2 format, chain H [auth X]	F [auth X], G [auth X], H [auth X]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X] Interactions & Density Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X]
FE2 Query on FE2 Download Ideal Coordinates CCD File SDF format, chain E [auth X] MOL2 format, chain E [auth X]	E [auth X]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain E [auth X] Interactions & Density Focus chain E [auth X]