7ZRO | pdb_00007zro

The spatial structure of amyloidogenic SEM1(68-107) peptide

PDB DOI: https://doi.org/10.2210/pdb7ZRO/pdb
BMRB: 51406

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2022-05-04 Released: 2022-06-22
Deposition Author(s): Sanchugova, D.A., Blokhin, D.S.
Funding Organization(s): Russian Science Foundation

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The spatial structure of amyloidogenic SEM1(68-107) peptide

Sanchugova, D.A., Blokhin, D.S.

To be published.

Macromolecule Content

Total Structure Weight: 4.63 kDa
Atom Count: 326
Modeled Residue Count: 40
Deposited Residue Count: 40
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Semenogelin-1	A	40	Homo sapiens	Mutation(s): 0 Gene Names: SEMG1, SEMG
UniProt & NIH Common Fund Data Resources
Find proteins for P04279 (Homo sapiens) Explore P04279 Go to UniProtKB: P04279
PHAROS: P04279 GTEx: ENSG00000124233
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P04279
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-06-22

Deposition Author(s):

Sanchugova, D.A.

Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	20-73-10034

Revision History (Full details and data files)

Version 1.0: 2022-06-22
Type: Initial release
Version 1.1: 2022-06-29
Changes: Source and taxonomy, Structure summary
Version 1.2: 2023-06-14
Changes: Other
Version 1.3: 2024-06-19
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.