7ZQ7 | pdb_00007zq7

Structure of RpF-1

• PDB DOI: https://doi.org/10.2210/pdb7ZQ7/pdb

• Classification: LIPID TRANSPORT
• Organism(s): Stenotrophomonas maltophilia
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-04-29 Released: 2023-05-10 
• Deposition Author(s): Sanchez-Alba, L., Reverter, D., Conchillo, O., Yero, D., Daura, X., Gibert, I.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.289 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.220 (Depositor) 

Starting Model: experimental

Literature

Structure of RpF-1

Sanchez-Alba, L., Reverter, D., Conchillo, O., Yero, D., Daura, X., Gibert, I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 203.47 kDa 
• Atom Count: 12,431 
• Modeled Residue Count: 1,599 
• Deposited Residue Count: 1,830 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Crotonase/enoyl-CoA hydratase family protein	A, B [auth D], C, D [auth B], E, F	305	Stenotrophomonas maltophilia	Mutation(s): 0  Gene Names: rpfF, B9Y74_06275, DUW70_13565, FEO86_10500, FEO88_11330, FEO89_10240, FLFIOBJN_02527, HKK60_11705, WP1W18C01_20950 EC: 4.2.1.17
UniProt
Find proteins for Q19VG8 (Stenotrophomonas maltophilia) Explore Q19VG8  Go to UniProtKB:  Q19VG8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.289 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.220 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.821	α = 90
b = 148.805	β = 112.11
c = 87.829	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
autoPROC	data reduction
autoPROC	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-05-10 
Deposition Author(s): Sanchez-Alba, L., Reverter, D., Conchillo, O., Yero, D., Daura, X., Gibert, I.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	--

Revision History  

• Version 1.0: 2023-05-10
  Type: Initial release
  
• Version 1.1: 2024-02-07
  Changes: Data collection, Refinement description