7ZMK | pdb_00007zmk

Structure of human MFAP4 in complex with the Fab fragment of the AS0326 monoclonal antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 
    0.277 (Depositor), 0.280 (DCC) 
  • R-Value Work: 
    0.239 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 
    0.240 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Pharmacological blocking of microfibrillar-associated protein 4 reduces retinal neoangiogenesis and vascular leakage.

Schlosser, A.Pilecki, B.Allen, C.Benest, A.V.Lynch, A.P.Hua, J.Ved, N.Blackley, Z.Andersen, T.L.Hennig, D.Graversen, J.H.Moller, S.Skallerup, S.Ormhoj, M.Lange, C.Agostini, H.T.Grauslund, J.Heegaard, S.Dacheva, I.Koss, M.Hu, W.Iglesias, B.Lawrence, M.S.Beck, H.C.Steffensen, L.B.Laursen, N.S.Andersen, G.R.Holmskov, U.Bates, D.O.Sorensen, G.L.

(2025) Mol Ther 

  • DOI: https://doi.org/10.1016/j.ymthe.2025.01.038
  • Primary Citation of Related Structures:  
    7ZMK

  • PubMed Abstract: 

    Neovascular age-related macular degeneration and diabetic macular edema are leading causes of vision-loss evoked by retinal neovascularization and vascular leakage. The glycoprotein microfibrillar-associated protein 4 (MFAP4) is an integrin α V β 3/5/6 ligand present in the extracellular matrix. Single-cell transcriptomics reveal MFAP4 expression in cell-types in close proximity to vascular endothelial cells including choroidal vascular mural cells and retinal astrocytes and Müller cells. Binding of the anti-MFAP4 antibody, hAS0326, makes MFAP4 inaccessible for integrin receptor interaction and thereby hAS0326 blocked endothelial cell motility in vitro. Intravitreal hAS0326 inhibited retinal vascular lesion area and neovessel volume in a laser-induced choroidal neovascularization mouse model, vascular permeability in streptozotocin-induced retinopathy and vascular leakage area in a chronic non-human primate model of DL-2-aminoadipic acid-induced retinopathy. One dose of hAS0326 showed duration of efficacy of at least 12 weeks in the latter model. Moreover, hAS0326-treatment significantly enriched gene ontology terms involving reduction of integrin binding. Our data suggest that hAS0326 constitutes a promising treatment of neovascularization and vascular leakage in retinal diseases.


  • Organizational Affiliation
    • Department of Molecular Medicine, University of Southern Denmark; Odense, 5230, Denmark.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Microfibril-associated glycoprotein 4
A, D, I, L, O
A, D, I, L, O, R, U, X
255Homo sapiensMutation(s): 0 
Gene Names: MFAP4
UniProt & NIH Common Fund Data Resources
Find proteins for P55083 (Homo sapiens)
Explore P55083 
Go to UniProtKB:  P55083
PHAROS:  P55083
GTEx:  ENSG00000166482 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55083
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
heavy chain of antibody AS0326
B, E, G, J, M
B, E, G, J, M, P, S, V
222Mus musculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Light chain of AS0326
C, F, H, K, N
C, F, H, K, N, Q, T, W
214Mus musculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free:  0.277 (Depositor), 0.280 (DCC) 
  • R-Value Work:  0.239 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 0.240 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 317.32α = 90
b = 126.6β = 98.857
c = 187.55γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmark--

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-01
    Type: Initial release
  • Version 1.1: 2024-02-07
    Changes: Data collection, Refinement description
  • Version 1.2: 2025-02-05
    Changes: Database references, Structure summary