7ZKY

Amyloid fibril from human systemic AA amyloidosis (vascular variant)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.56 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Amyloid fibril structure from the vascular variant of systemic AA amyloidosis.

Banerjee, S.Baur, J.Daniel, C.Pfeiffer, P.B.Hitzenberger, M.Kuhn, L.Wiese, S.Bijzet, J.Haupt, C.Amann, K.U.Zacharias, M.Hazenberg, B.P.C.Westermark, G.T.Schmidt, M.Fandrich, M.

(2022) Nat Commun 13: 7261-7261

  • DOI: https://doi.org/10.1038/s41467-022-34636-4
  • Primary Citation of Related Structures:  
    7ZKY

  • PubMed Abstract: 

    Systemic AA amyloidosis is a debilitating protein misfolding disease in humans and animals. In humans, it occurs in two variants that are called 'vascular' and 'glomerular', depending on the main amyloid deposition site in the kidneys. Using cryo electron microscopy, we here show the amyloid fibril structure underlying the vascular disease variant. Fibrils purified from the tissue of such patients are mainly left-hand twisted and contain two non-equal stacks of fibril proteins. They contrast in these properties to the fibrils from the glomerular disease variant which are right-hand twisted and consist of two structurally equal stacks of fibril proteins. Our data demonstrate that the different disease variants in systemic AA amyloidosis are associated with different fibril morphologies.


  • Organizational Affiliation

    Institute of Protein Biochemistry, Ulm University, 89081, Ulm, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Amyloid protein A68Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P0DJI8 (Homo sapiens)
Explore P0DJI8 
Go to UniProtKB:  P0DJI8
PHAROS:  P0DJI8
GTEx:  ENSG00000173432 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DJI8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.56 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-07
    Type: Initial release