7ZKF

Crystal Structure of human Brachyury G177D variant in complex with CF-5-86

• PDB DOI: https://doi.org/10.2210/pdb7ZKF/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-04-12 Released: 2022-06-22 
• Deposition Author(s): Newman, J.A., Gavard, A., Aitkenhead, H., Imprachim, N., Sherestha, L., Burgess-Brown, N.A., von Delft, F., Bountra, C., Gileadi, O.
• Funding Organization(s): The Mark Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.219 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 

Literature

Crystal Structure of human Brachyury G177D variant in complex with CF-5-86

Newman, J.A., Gavard, A., Aitkenhead, H., Imprachim, N., Sherestha, L., Burgess-Brown, N.A., von Delft, F., Bountra, C., Gileadi, O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 19.75 kDa 
• Atom Count: 1,716 
• Modelled Residue Count: 171 
• Deposited Residue Count: 172 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
T-box transcription factor T	A	172	Homo sapiens	Mutation(s): 1  Gene Names: TBXT, T
UniProt & NIH Common Fund Data Resources
Find proteins for O15178 (Homo sapiens) Explore O15178  Go to UniProtKB:  O15178
PHAROS:  O15178 GTEx:  ENSG00000164458

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
UNL (Subject of Investigation/LOI)	B [auth A]	Unknown ligand NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.219 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 
• Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.96	α = 90
b = 99.96	β = 90
c = 99.03	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
REFMAC	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-22 
Deposition Author(s): Newman, J.A., Gavard, A., Aitkenhead, H., Imprachim, N., Sherestha, L., Burgess-Brown, N.A., von Delft, F., Bountra, C., Gileadi, O.

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Funding Organization	Location	Grant Number
The Mark Foundation	United States	--

Revision History  

• Version 1.0: 2022-06-22
  Type: Initial release