7ZHS

3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The self-association equilibrium of DNAJA2 regulates its interaction with unfolded substrate proteins and with Hsc70.

Velasco-Carneros, L.Cuellar, J.Dublang, L.Santiago, C.Marechal, J.D.Martin-Benito, J.Maestro, M.Fernandez-Higuero, J.A.Orozco, N.Moro, F.Valpuesta, J.M.Muga, A.

(2023) Nat Commun 14: 5436-5436

  • DOI: https://doi.org/10.1038/s41467-023-41150-8
  • Primary Citation of Related Structures:  
    7ZHS

  • PubMed Abstract: 

    J-domain proteins tune the specificity of Hsp70s, engaging them in precise functions. Despite their essential role, the structure and function of many J-domain proteins remain largely unknown. We explore human DNAJA2, finding that it reversibly forms highly-ordered, tubular structures that can be dissociated by Hsc70, the constitutively expressed Hsp70 isoform. Cryoelectron microscopy and mutational studies reveal that different domains are involved in self-association. Oligomer dissociation into dimers potentiates its interaction with unfolded client proteins. The J-domains are accessible to Hsc70 within the tubular structure. They allow binding of closely spaced Hsc70 molecules that could be transferred to the unfolded substrate for its cooperative remodelling, explaining the efficient recovery of DNAJA2-bound clients. The disordered C-terminal domain, comprising the last 52 residues, regulates its holding activity and productive interaction with Hsc70. These in vitro findings suggest that the association equilibrium of DNAJA2 could regulate its interaction with client proteins and Hsc70.


  • Organizational Affiliation

    Biofisika Institute (CSIC, UPV/EHU), University of the Basque Country, 48940, Leioa, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-like protein SMT3,DnaJ homolog subfamily A member 2497Saccharomyces cerevisiae S288CHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: SMT3YDR510WD9719.15DNAJA2CPR3HIRIP4
UniProt & NIH Common Fund Data Resources
Find proteins for O60884 (Homo sapiens)
Explore O60884 
Go to UniProtKB:  O60884
PHAROS:  O60884
GTEx:  ENSG00000069345 
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12306 
Go to UniProtKB:  Q12306
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ12306O60884
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
AB [auth F]
AC [auth V]
AD [auth L]
BB [auth F]
BC [auth V]
AB [auth F],
AC [auth V],
AD [auth L],
BB [auth F],
BC [auth V],
BD [auth L],
CB [auth H],
CC [auth Z],
CD [auth T],
DB [auth H],
DC [auth Z],
DD [auth T],
EB [auth I],
EC [auth h],
ED [auth P],
FB [auth I],
FC [auth h],
FD [auth P],
GB [auth Q],
GC [auth d],
GD [auth X],
HB [auth Q],
HC [auth d],
HD [auth X],
IB [auth M],
IC [auth l],
ID [auth b],
JB [auth M],
JC [auth l],
JD [auth b],
KB [auth U],
KC [auth K],
KD [auth j],
LB [auth U],
LC [auth K],
LD [auth j],
MB [auth Y],
MC [auth S],
MD [auth f],
NB [auth Y],
NC [auth S],
ND [auth f],
OA [auth A],
OB [auth g],
OC [auth O],
OD [auth n],
PA [auth A],
PB [auth g],
PC [auth O],
PD [auth n],
QA [auth C],
QB [auth c],
QC [auth W],
RA [auth C],
RB [auth c],
RC [auth W],
SA [auth B],
SB [auth k],
SC [auth a],
TA [auth B],
TB [auth k],
TC [auth a],
UA [auth D],
UB [auth J],
UC [auth i],
VA [auth D],
VB [auth J],
VC [auth i],
WA [auth E],
WB [auth R],
WC [auth e],
XA [auth E],
XB [auth R],
XC [auth e],
YA [auth G],
YB [auth N],
YC [auth m],
ZA [auth G],
ZB [auth N],
ZC [auth m]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTREFMAC5

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Science, Innovation, and UniversitiesSpainPID2019-105872GB-I00
Spanish Ministry of Science, Innovation, and UniversitiesSpainPID2019-111068GB-I00

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-26
    Type: Initial release
  • Version 1.1: 2024-01-24
    Changes: Data collection, Database references