Download MendeleyA quinolin-8-ol sub-millimolar inhibitor of UGGT, the ER glycoprotein quality control checkpoint
Roversi, P., Zitzmann, N., Bayo, Y.To be published.
7ZHB
Catalytic domain of UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum in complex with UDP-glucose (conformation 2)
- PDB DOI: 10.2210/pdb7ZHB/pdb
- Classification: TRANSFERASE
- Organism(s): Chaetomium thermophilum
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2022-04-06 Released: 2022-04-20
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.211
- R-Value Work: 0.184
- R-Value Observed: 0.185
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-glucose-glycoprotein glucosyltransferase-like protein | A | 299 | Chaetomium thermophilum | Mutation(s): 0 Gene Names: CTHT_0048990 |  |
UniProt | |||||
Find proteins for G0SB58 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SB58 Go to UniProtKB: G0SB58 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G0SB58 | ||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 2 |  | N-Glycosylation | Oligosaccharides Interaction |
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UPG (Subject of Investigation/LOI) Query on UPG | C [auth A] | URIDINE-5'-DIPHOSPHATE-GLUCOSE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N |  | Ligand Interaction | |
| PDO Query on PDO | H [auth A], I [auth A], J [auth A] | 1,3-PROPANDIOL C3 H8 O2 YPFDHNVEDLHUCE-UHFFFAOYSA-N |  | Ligand Interaction | |
| IPA Query on IPA | E [auth A], F [auth A], G [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA (Subject of Investigation/LOI) Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.211
- R-Value Work: 0.184
- R-Value Observed: 0.185
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.442 | α = 90 |
| b = 121.442 | β = 90 |
| c = 62.117 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| autoBUSTER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-04-20 Deposition Author(s): Roversi, P., Zitzmann, N., Bayo, Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 106272/Z/14/Z |
| Wellcome Trust | United Kingdom | 204801/Z/16/Z |
| Wellcome Trust | United Kingdom | 214090/Z/18/Z |
Revision History (Full details and data files)
- Version 1.0: 2022-04-20
Type: Initial release
