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 7ZCG | pdb_00007zcg

CHMP2A-CHMP3 heterodimer (430 Angstrom diameter)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7ZCG

This is version 1.2 of the entry. See complete history. 

Literature

Structural basis of CHMP2A-CHMP3 ESCRT-III polymer assembly and membrane cleavage.

Azad, K., Guilligay, D., Boscheron, C., Maity, S., De Franceschi, N., Sulbaran, G., Effantin, G., Wang, H., Kleman, J.P., Bassereau, P., Schoehn, G., Roos, W.H., Desfosses, A., Weissenhorn, W.

(2023) Nat Struct Mol Biol 30: 81-90

  • DOI: https://doi.org/10.1038/s41594-022-00867-8
  • Primary Citation Related Structures: 
    7ZCG, 7ZCH

  • PubMed Abstract: 

    The endosomal sorting complex required for transport (ESCRT) is a highly conserved protein machinery that drives a divers set of physiological and pathological membrane remodeling processes. However, the structural basis of ESCRT-III polymers stabilizing, constricting and cleaving negatively curved membranes is yet unknown. Here we present cryo-EM structures of membrane-coated CHMP2A-CHMP3 filaments from Homo sapiens of two different diameters at 3.3 and 3.6 Å resolution. The structures reveal helical filaments assembled by CHMP2A-CHMP3 heterodimers in the open ESCRT-III conformation, which generates a partially positive charged membrane interaction surface, positions short N-terminal motifs for membrane interaction and the C-terminal VPS4 target sequence toward the tube interior. Inter-filament interactions are electrostatic, which may facilitate filament sliding upon VPS4-mediated polymer remodeling. Fluorescence microscopy as well as high-speed atomic force microscopy imaging corroborate that VPS4 can constrict and cleave CHMP2A-CHMP3 membrane tubes. We therefore conclude that CHMP2A-CHMP3-VPS4 act as a minimal membrane fission machinery.


  • Organizational Affiliation: 
    • Institute of Structural Biology (IBS), University Grenoble Alpes, CEA, CNRS, Grenoble, France.

Macromolecule Content 

  • Total Structure Weight: 35.74 kDa 
  • Atom Count: 2,468 
  • Modeled Residue Count: 306 
  • Deposited Residue Count: 306 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Charged multivesicular body protein 2aA [auth B]147Homo sapiensMutation(s): 0 
Gene Names: CHMP2A, BC2, CHMP2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O43633 (Homo sapiens)
Explore O43633 
Go to UniProtKB:  O43633
PHAROS:  O43633
GTEx:  ENSG00000130724 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO43633
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Charged multivesicular body protein 3B [auth A]159Homo sapiensMutation(s): 0 
Gene Names: CHMP3, CGI149, NEDF, VPS24, CGI-149
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3E7 (Homo sapiens)
Explore Q9Y3E7 
Go to UniProtKB:  Q9Y3E7
PHAROS:  Q9Y3E7
GTEx:  ENSG00000115561 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y3E7
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-14-CE09-0003-01
Agence Nationale de la Recherche (ANR)FranceANR-19-CE11-0002-02
Agence Nationale de la Recherche (ANR)FranceANR-17-EURE-0003

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release
  • Version 1.1: 2023-02-01
    Changes: Database references
  • Version 1.2: 2024-07-24
    Changes: Data collection, Refinement description