7YOX

Cryo-EM structure of the N-terminal domain of hMCM8/9 and HROB


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and mechanistic insights into the MCM8/9 helicase complex.

Weng, Z.Zheng, J.Zhou, Y.Lu, Z.Wu, Y.Xu, D.Li, H.Liang, H.Liu, Y.

(2023) Elife 12

  • DOI: https://doi.org/10.7554/eLife.87468
  • Primary Citation of Related Structures:  
    7W7P, 7YOX

  • PubMed Abstract: 

    MCM8 and MCM9 form a functional helicase complex (MCM8/9) that plays an essential role in DNA homologous recombination repair for DNA double-strand break. However, the structural characterization of MCM8/9 for DNA binding/unwinding remains unclear. Here, we report structures of the MCM8/9 complex using cryo-electron microscopy single particle analysis. The structures reveal that MCM8/9 is arranged into a heterohexamer through a threefold symmetry axis, creating a central channel that accommodates DNA. Multiple characteristic hairpins from the N-terminal oligosaccharide/oligonucleotide (OB) domains of MCM8/9 protrude into the central channel and serve to unwind the duplex DNA. When activated by HROB, the structure of MCM8/9's N-tier ring converts its symmetry from C3 to C1 with a conformational change that expands the MCM8/9's trimer interface. Moreover, our structural dynamic analyses revealed that the flexible C-tier ring exhibited rotary motions relative to the N-tier ring, which is required for the unwinding ability of MCM8/9. In summary, our structural and biochemistry study provides a basis for understanding the DNA unwinding mechanism of MCM8/9 helicase in homologous recombination.


  • Organizational Affiliation

    Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, School of Medicine, Shenzhen Campus of Sun Yat-sen University, Shenzhen, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA helicase MCM8
A, C, F
316Homo sapiensMutation(s): 0 
Gene Names: MCM8C20orf154
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UJA3 (Homo sapiens)
Explore Q9UJA3 
Go to UniProtKB:  Q9UJA3
PHAROS:  Q9UJA3
GTEx:  ENSG00000125885 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UJA3
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA helicase MCM9
B, D, E
276Homo sapiensMutation(s): 0 
Gene Names: MCM9C6orf61MCMDC1
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NXL9 (Homo sapiens)
Explore Q9NXL9 
Go to UniProtKB:  Q9NXL9
PHAROS:  Q9NXL9
GTEx:  ENSG00000111877 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NXL9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31530015

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-09
    Type: Initial release
  • Version 1.1: 2023-12-06
    Changes: Data collection, Database references