7YKP

Crystal structure of a novel alpha/beta hydrolase from thermomonospora curvata with glycerol

• PDB DOI: https://doi.org/10.2210/pdb7YKP/pdb

• Classification: HYDROLASE
• Organism(s): Thermomonospora curvata DSM 43183
• Expression System: Trichoderma reesei QM6a
• Mutation(s): No 


• Deposited: 2022-07-23 Released: 2023-07-26 
• Deposition Author(s): Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.
• Funding Organization(s): Chinese Scholarship Council, Chinese Academy of Sciences

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 0.168 
• R-Value Work: 0.158 
• R-Value Observed: 0.158 

Literature

Crystal structure of a novel alpha/beta hydrolase from thermomonospora curvata with glycerol

Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 28.51 kDa 
• Atom Count: 2,448 
• Modelled Residue Count: 260 
• Deposited Residue Count: 260 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Triacylglycerol lipase	A	260	Thermomonospora curvata DSM 43183	Mutation(s): 0  Gene Names: Tcur_1278 EC: 3.1.1.3
UniProt
Find proteins for D1A9G5 (Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / KCTC 9072 / NBRC 15933 / NCIMB 10081 / Henssen B9)) Explore D1A9G5  Go to UniProtKB:  D1A9G5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 0.168 
• R-Value Work: 0.158 
• R-Value Observed: 0.158 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.63	α = 90
b = 71.58	β = 90
c = 143.21	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-07-26 
Deposition Author(s): Han, X., Jian, G., Bornscheuer, U.T., Wei, R., Liu, W.

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Funding Organization	Location	Grant Number
Chinese Scholarship Council	China	--
Chinese Academy of Sciences	China	--

Revision History  

• Version 1.0: 2023-07-26
  Type: Initial release