7YDO

Crystal structure of Atg44


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

The mitochondrial intermembrane space protein mitofissin drives mitochondrial fission required for mitophagy.

Fukuda, T.Furukawa, K.Maruyama, T.Yamashita, S.I.Noshiro, D.Song, C.Ogasawara, Y.Okuyama, K.Alam, J.M.Hayatsu, M.Saigusa, T.Inoue, K.Ikeda, K.Takai, A.Chen, L.Lahiri, V.Okada, Y.Shibata, S.Murata, K.Klionsky, D.J.Noda, N.N.Kanki, T.

(2023) Mol Cell 83: 2045-2058.e9

  • DOI: https://doi.org/10.1016/j.molcel.2023.04.022
  • Primary Citation of Related Structures:  
    7YDO

  • PubMed Abstract: 

    Mitophagy plays an important role in mitochondrial homeostasis by selective degradation of mitochondria. During mitophagy, mitochondria should be fragmented to allow engulfment within autophagosomes, whose capacity is exceeded by the typical mitochondria mass. However, the known mitochondrial fission factors, dynamin-related proteins Dnm1 in yeasts and DNM1L/Drp1 in mammals, are dispensable for mitophagy. Here, we identify Atg44 as a mitochondrial fission factor that is essential for mitophagy in yeasts, and we therefore term Atg44 and its orthologous proteins mitofissin. In mitofissin-deficient cells, a part of the mitochondria is recognized by the mitophagy machinery as cargo but cannot be enwrapped by the autophagosome precursor, the phagophore, due to a lack of mitochondrial fission. Furthermore, we show that mitofissin directly binds to lipid membranes and brings about lipid membrane fragility to facilitate membrane fission. Taken together, we propose that mitofissin acts directly on lipid membranes to drive mitochondrial fission required for mitophagy.


  • Organizational Affiliation

    Department of Cellular Physiology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C26A3.14c
A, B, C, D
83Schizosaccharomyces pombe 972h-Mutation(s): 0 
Gene Names: SPAC26A3.14c
UniProt
Find proteins for Q10167 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore Q10167 
Go to UniProtKB:  Q10167
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ10167
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 
  • Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.364α = 90
b = 82.364β = 90
c = 113.427γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Science and TechnologyJapanJPMJCR20E3
Japan Society for the Promotion of Science (JSPS)Japan19H05707

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-17
    Type: Initial release
  • Version 1.1: 2023-05-31
    Changes: Database references
  • Version 1.2: 2023-06-28
    Changes: Database references