7Y9T

Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the apo state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into auxin recognition and efflux by Arabidopsis PIN1.

Yang, Z.Xia, J.Hong, J.Zhang, C.Wei, H.Ying, W.Sun, C.Sun, L.Mao, Y.Gao, Y.Tan, S.Friml, J.Li, D.Liu, X.Sun, L.

(2022) Nature 609: 611-615

  • DOI: https://doi.org/10.1038/s41586-022-05143-9
  • Primary Citation of Related Structures:  
    7Y9T, 7Y9U, 7Y9V

  • PubMed Abstract: 

    Polar auxin transport is unique to plants and coordinates their growth and development 1,2 . The PIN-FORMED (PIN) auxin transporters exhibit highly asymmetrical localizations at the plasma membrane and drive polar auxin transport 3,4 ; however, their structures and transport mechanisms remain largely unknown. Here, we report three inward-facing conformation structures of Arabidopsis thaliana PIN1: the apo state, bound to the natural auxin indole-3-acetic acid (IAA), and in complex with the polar auxin transport inhibitor N-1-naphthylphthalamic acid (NPA). The transmembrane domain of PIN1 shares a conserved NhaA fold 5 . In the substrate-bound structure, IAA is coordinated by both hydrophobic stacking and hydrogen bonding. NPA competes with IAA for the same site at the intracellular pocket, but with a much higher affinity. These findings inform our understanding of the substrate recognition and transport mechanisms of PINs and set up a framework for future research on directional auxin transport, one of the most crucial processes underlying plant development.


  • Organizational Affiliation

    The First Affiliated Hospital of USTC, MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics, Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Auxin efflux carrier component 1A,
D [auth B]
622Arabidopsis thalianaMutation(s): 0 
Gene Names: PIN1
Membrane Entity: Yes 
UniProt
Find proteins for Q9C6B8 (Arabidopsis thaliana)
Explore Q9C6B8 
Go to UniProtKB:  Q9C6B8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9C6B8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
nanobodyB [auth D],
C
123Escherichia coliMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37020103
National Natural Science Foundation of China (NSFC)China31900885 and 31870732
Other government2008085MC90 and 2008085J15
Other governmentChinaWK9100000031 and YD9100002004

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-07
    Type: Initial release
  • Version 1.1: 2022-09-14
    Changes: Database references
  • Version 1.2: 2022-09-28
    Changes: Database references