7Y5M | pdb_00007y5m

The OTU domain of Tacheng Tick Virus 1

• PDB DOI: https://doi.org/10.2210/pdb7Y5M/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Tacheng Tick Virus 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-06-17 Released: 2023-06-21 
• Deposition Author(s): Li, Z., Wang, W.J., Xiao, Y.S., Sun, L.T.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.198 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.199 (Depositor) 

Starting Model: experimental

Literature

The OTU domain of Tacheng Tick Virus 1

Li, Z., Wang, W.J., Xiao, Y.S., Sun, L.T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 19.23 kDa 
• Atom Count: 1,373 
• Modeled Residue Count: 155 
• Deposited Residue Count: 170 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	A	170	Tacheng Tick Virus 1	Mutation(s): 0  EC: 2.7.7.48
UniProt
Find proteins for A0A0B5KXW6 (Tacheng Tick Virus 1) Explore A0A0B5KXW6  Go to UniProtKB:  A0A0B5KXW6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.230 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.198 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.199 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.747	α = 90
b = 58.11	β = 90
c = 59.42	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AutoSol	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-06-21 
Deposition Author(s): Li, Z., Wang, W.J., Xiao, Y.S., Sun, L.T.

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Funding Organization	Location	Grant Number
Other government		JCYJ20190807155011406
Other government		KQTD20180411143323605
Other government		GXWD20201231165807008
Other government		20200825113322001
Other government		JSGG20200225152008136
Other government		2021B1515020047
Other government		31971147

Revision History  

• Version 1.0: 2023-06-21
  Type: Initial release
  
• Version 1.1: 2023-11-15
  Changes: Data collection, Source and taxonomy
• Version 1.2: 2023-11-29
  Changes: Refinement description