7XZJ

Cryo-EM structure of TOC complex from Chlamydomonas reinhardtii.

  • Classification: TRANSLOCASE
  • Organism(s): Chlamydomonas reinhardtii
  • Mutation(s): No 
  • Membrane Protein: Yes  OPMPDBTM

  • Deposited: 2022-06-02 Released: 2023-01-11 
  • Deposition Author(s): Liu, H., Li, A.J., Liu, Z.F.
  • Funding Organization(s): Chinese Academy of Sciences, National Natural Science Foundation of China (NSFC), Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Architecture of chloroplast TOC-TIC translocon supercomplex.

Liu, H.Li, A.Rochaix, J.D.Liu, Z.

(2023) Nature 615: 349-357

  • DOI: https://doi.org/10.1038/s41586-023-05744-y
  • Primary Citation of Related Structures:  
    7XZI, 7XZJ

  • PubMed Abstract: 

    Chloroplasts rely on the translocon complexes in the outer and inner envelope membranes (the TOC and TIC complexes, respectively) to import thousands of different nuclear-encoded proteins from the cytosol 1-4 . Although previous studies indicated that the TOC and TIC complexes may assemble into larger supercomplexes 5-7 , the overall architectures of the TOC-TIC supercomplexes and the mechanism of preprotein translocation are unclear. Here we report the cryo-electron microscopy structure of the TOC-TIC supercomplex from Chlamydomonas reinhardtii. The major subunits of the TOC complex (Toc75, Toc90 and Toc34) and TIC complex (Tic214, Tic20, Tic100 and Tic56), three chloroplast translocon-associated proteins (Ctap3, Ctap4 and Ctap5) and three newly identified small inner-membrane proteins (Simp1-3) have been located in the supercomplex. As the largest protein, Tic214 traverses the inner membrane, the intermembrane space and the outer membrane, connecting the TOC complex with the TIC proteins. An inositol hexaphosphate molecule is located at the Tic214-Toc90 interface and stabilizes their assembly. Four lipid molecules are located within or above an inner-membrane funnel formed by Tic214, Tic20, Simp1 and Ctap5. Multiple potential pathways found in the TOC-TIC supercomplex may support translocation of different substrate preproteins into chloroplasts.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, CAS Centre for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ctap3A [auth 3]477Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D4W3 (Chlamydomonas reinhardtii)
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UniProt GroupA0A2K3D4W3
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Toc39B [auth 4]363Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J6H7 (Chlamydomonas reinhardtii)
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UniProt GroupA8J6H7
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Toc75C [auth 7]798Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IE32 (Chlamydomonas reinhardtii)
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UniProt GroupA8IE32
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Toc90D [auth 9]967Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CR90 (Chlamydomonas reinhardtii)
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UniProt GroupA0A2K3CR90
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tic214E [auth A]1,995Chlamydomonas reinhardtiiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P36495 (Chlamydomonas reinhardtii)
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UniProt GroupP36495
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Tic100F [auth E]955Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DQY7 (Chlamydomonas reinhardtii)
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UniProt GroupA0A2K3DQY7
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Toc34397Chlamydomonas reinhardtiiMutation(s): 0 
EC: 3.6.5
Membrane Entity: Yes 
UniProt
Find proteins for A8HYJ1 (Chlamydomonas reinhardtii)
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UniProt GroupA8HYJ1
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  • Reference Sequence

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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown peptideH [auth X]24Chlamydomonas reinhardtiiMutation(s): 0 
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IHP (Subject of Investigation/LOI)
Query on IHP

Download Ideal Coordinates CCD File 
I [auth A]INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1-4487

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaYSBR-015
National Natural Science Foundation of China (NSFC)China31925024
Ministry of Science and Technology (MoST, China)China2017YFA0503702
Chinese Academy of SciencesChinaXDB37020101

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release
  • Version 1.1: 2023-01-18
    Changes: Database references
  • Version 1.2: 2023-02-15
    Changes: Database references
  • Version 1.3: 2023-03-22
    Changes: Database references