7XY1 | pdb_00007xy1

Cryo-EM structure of Klebsiella phage Kp9 type I tail fiber gp42 in vitro

PDB DOI: https://doi.org/10.2210/pdb7XY1/pdb
EM Map EMD-33507: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Klebsiella phage Kp9
Expression System: Escherichia
Mutation(s): No

Deposited: 2022-05-31 Released: 2023-06-07
Deposition Author(s): Huang, L., Xiang, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure and assembly of the Klebsiella pneumoniae phage tail fibers

Huang, L., Xiang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 252.36 kDa
Atom Count: 11,550
Modeled Residue Count: 1,536
Deposited Residue Count: 2,331
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail fiber protein	A, B, C	777	Klebsiella phage Kp9	Mutation(s): 0 Gene Names: KpPokalde002_039
UniProt
Find proteins for A0AA82WNZ1 (Klebsiella phage Kp9) Explore A0AA82WNZ1 Go to UniProtKB: A0AA82WNZ1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0AA82WNZ1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-06-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2023-06-07
Type: Initial release
Version 1.1: 2024-07-03
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.