7XVO | pdb_00007xvo

a bacteria protein complex

PDB DOI: https://doi.org/10.2210/pdb7XVO/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Neisseria meningitidis, Haemophilus parainfluenzae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-05-24 Released: 2023-08-30
Deposition Author(s): Zhang, H., Li, X.Z., Song, G.Y.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.260 (Depositor), 0.263 (DCC)
R-Value Work:
0.231 (Depositor), 0.231 (DCC)
R-Value Observed:
0.232 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7XVO

This is version 1.0 of the entry. See complete history.

Literature

a bacteria protein

Zhang, H., Li, X.Z., Song, G.Y.

To be published.

Macromolecule Content

Total Structure Weight: 33.07 kDa
Atom Count: 2,419
Modeled Residue Count: 288
Deposited Residue Count: 289
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated endonuclease Cas9	A	201	Neisseria meningitidis	Mutation(s): 0 Gene Names: cas9 EC: 3.1
UniProt
Find proteins for C9X1G5 (Neisseria meningitidis serogroup C (strain 8013)) Explore C9X1G5 Go to UniProtKB: C9X1G5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C9X1G5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	B [auth D]	88	Haemophilus parainfluenzae	Mutation(s): 0 Gene Names: NCTC10672_00033, NCTC10672_02354
UniProt
Find proteins for A0A377JKY9 (Haemophilus parainfluenzae) Explore A0A377JKY9 Go to UniProtKB: A0A377JKY9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A377JKY9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.260 (Depositor), 0.263 (DCC)
R-Value Work: 0.231 (Depositor), 0.231 (DCC)
R-Value Observed: 0.232 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.21	α = 90
b = 127.21	β = 90
c = 44.384	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-08-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government		--

Revision History (Full details and data files)

Version 1.0: 2023-08-30
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.