7XHZ | pdb_00007xhz

Crystal structure of SAV2152 from MRSA

• PDB DOI: https://doi.org/10.2210/pdb7XHZ/pdb

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-04-11 Released: 2023-04-12 
• Deposition Author(s): Park, H.J., Seok, S.H., Kim, J.H.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 
  0.218 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.188 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.189 (Depositor) 

Literature

Crystal structure of SAV2152 from MRSA

Park, H.J., Seok, S.H., Kim, J.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 26.49 kDa 
• Atom Count: 1,981 
• Modeled Residue Count: 231 
• Deposited Residue Count: 231 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphatase, SAV2152	A	231	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0  Gene Names: SAV2152
UniProt
Find proteins for A0A0H3JWK0 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JWK0  Go to UniProtKB:  A0A0H3JWK0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free:  0.218 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.188 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.189 (Depositor) 

Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.61	α = 90
b = 63.06	β = 90
c = 92.73	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	phasing
HKL-2000	data scaling
PHENIX	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-04-12 
Deposition Author(s): Park, H.J., Seok, S.H., Kim, J.H.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-04-12
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Structure summary