7XFU | pdb_00007xfu

MucP PDZ2 domain with peptide GPAVLA

PDB DOI: https://doi.org/10.2210/pdb7XFU/pdb

Classification: LYASE
Organism(s): Pseudomonas aeruginosa PAO1, synthetic construct
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2022-04-02 Released: 2023-04-05
Deposition Author(s): Lou, X., Li, S., Zhang, Q., Bartlam, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free:
0.221 (Depositor), 0.221 (DCC)
R-Value Work:
0.188 (Depositor), 0.188 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

MucP PDZ2 domain with peptide GPAVLA

Lou, X., Li, S., Zhang, Q., Bartlam, M.

To be published.

Macromolecule Content

Total Structure Weight: 19.59 kDa
Atom Count: 1,597
Modeled Residue Count: 184
Deposited Residue Count: 190
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative zinc metalloprotease PA3649,peptide GPAVLA	A, B	95	Pseudomonas aeruginosa PAO1, synthetic construct This entity is chimeric	Mutation(s): 0 Gene Names: PA3649 EC: 3.4.24
UniProt
Find proteins for Q9HXY3 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HXY3 Go to UniProtKB: Q9HXY3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9HXY3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.221 (Depositor), 0.221 (DCC)
R-Value Work: 0.188 (Depositor), 0.188 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.865	α = 90
b = 34.865	β = 90
c = 114.467	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-04-05

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31800627
National Natural Science Foundation of China (NSFC)	China	31870053

Revision History (Full details and data files)

Version 1.0: 2023-04-05
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.