7XBQ

Crystal structure of potato 14-3-3 protein St14f


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.212 

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This is version 1.1 of the entry. See complete history


Literature

Crystal structure of potato 14-3-3 protein St14f revealed the importance of helix I in StFDL1 recognition.

Harada, K.I.Furuita, K.Yamashita, E.Taoka, K.I.Tsuji, H.Fujiwara, T.Nakagawa, A.Kojima, C.

(2022) Sci Rep 12: 11596-11596

  • DOI: https://doi.org/10.1038/s41598-022-15505-y
  • Primary Citation of Related Structures:  
    7XBQ

  • PubMed Abstract: 

    In potato (Solanum tuberosum L.), 14-3-3 protein forms a protein complex with the FLOWERING LOCUS T (FT)-like protein StSP6A and the FD-like protein StFDL1 to activate potato tuber formation. Eleven 14-3-3 isoforms were reported in potato, designated as St14a-k. In this study, the crystal structure of the free form of St14f was determined at 2.5 Å resolution. Three chains were included in the asymmetric unit of the St14f free form crystal, and the structural deviation among the three chain structures was found on the C-terminal helix H and I. The St14f free form structure in solution was also investigated by nuclear magnetic resonance (NMR) residual dipolar coupling analysis, and the chain B in the crystal structure was consistent with NMR data. Compared to other crystal structures, St14f helix I exhibited a different conformation with larger B-factor values. Larger B-factor values on helix I were also found in the 14-3-3 free form structure with higher solvent contents. The mutation in St14f Helix I stabilized the complex with StFDL1. These data clearly showed that the flexibility of helix I of 14-3-3 protein plays an important role in the recognition of target protein.


  • Organizational Affiliation

    Institute for Protein Research, Osaka University, Suita, Osaka, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative 14-3-3 protein
A, B, C
258Solanum tuberosumMutation(s): 0 
Gene Names: 30G14-3-3St14f
UniProt
Find proteins for M1BI71 (Solanum tuberosum)
Explore M1BI71 
Go to UniProtKB:  M1BI71
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM1BI71
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.212 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 230.198α = 90
b = 105.281β = 104.84
c = 60.987γ = 90
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan17H05836
Japan Society for the Promotion of Science (JSPS)Japan19H04856
Japan Society for the Promotion of Science (JSPS)Japan20H03191
Japan Agency for Medical Research and Development (AMED)JapanJP21am0101072

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-20
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description