7XA3

Cryo-EM structure of the CCL2 bound CCR2-Gi complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Molecular insights into ligand recognition and activation of chemokine receptors CCR2 and CCR3.

Shao, Z.Tan, Y.Shen, Q.Hou, L.Yao, B.Qin, J.Xu, P.Mao, C.Chen, L.N.Zhang, H.Shen, D.D.Zhang, C.Li, W.Du, X.Li, F.Chen, Z.H.Jiang, Y.Xu, H.E.Ying, S.Ma, H.Zhang, Y.Shen, H.

(2022) Cell Discov 8: 44-44

  • DOI: https://doi.org/10.1038/s41421-022-00403-4
  • Primary Citation of Related Structures:  
    7X9Y, 7XA3

  • PubMed Abstract: 

    Chemokine receptors are a family of G-protein-coupled receptors with key roles in leukocyte migration and inflammatory responses. Here, we present cryo-electron microscopy structures of two human CC chemokine receptor-G-protein complexes: CCR2 bound to its endogenous ligand CCL2, and CCR3 in the apo state. The structure of the CCL2-CCR2-G-protein complex reveals that CCL2 inserts deeply into the extracellular half of the transmembrane domain, and forms substantial interactions with the receptor through the most N-terminal glutamine. Extensive hydrophobic and polar interactions are present between both two chemokine receptors and the Gα-protein, contributing to the constitutive activity of these receptors. Notably, complemented with functional experiments, the interactions around intracellular loop 2 of the receptors are found to be conserved and play a more critical role in G-protein activation than those around intracellular loop 3. Together, our findings provide structural insights into chemokine recognition and receptor activation, shedding lights on drug design targeting chemokine receptors.


  • Organizational Affiliation

    Key Laboratory of Respiratory Disease of Zhejiang Province, Department of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform B of C-C chemokine receptor type 2A [auth R]360Homo sapiensMutation(s): 0 
Gene Names: CCR2CMKBR2
Membrane Entity: Yes 
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Find proteins for P41597 (Homo sapiens)
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Go to UniProtKB:  P41597
PHAROS:  P41597
GTEx:  ENSG00000121807 
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UniProt GroupP41597
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C-C motif chemokine 2B [auth L]69Homo sapiensMutation(s): 0 
Gene Names: CCL2MCP1SCYA2
Membrane Entity: Yes 
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Find proteins for P13500 (Homo sapiens)
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PHAROS:  P13500
GTEx:  ENSG00000108691 
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UniProt GroupP13500
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1C [auth A]354Homo sapiensMutation(s): 0 
Gene Names: GNAI1
Membrane Entity: Yes 
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Find proteins for P63096 (Homo sapiens)
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PHAROS:  P63096
GTEx:  ENSG00000127955 
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UniProt GroupP63096
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1D [auth B]365Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2E [auth C]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16F [auth E]256Homo sapiensMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-24
    Type: Initial release