7X84 | pdb_00007x84

Cryo-EM structure of the TMEM106B fibril from Parkinson's disease dementia

• PDB DOI: https://doi.org/10.2210/pdb7X84/pdb
• EM Map EMD-33055: EMDB EMDataResource

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2022-03-11 Released: 2022-06-15 
• Deposition Author(s): Zhao, Q.Y., Xia, W.C., Fan, Y., Sun, Y.P., Tao, Y.Q., Liu, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

Generic amyloid fibrillation of TMEM106B in patient with Parkinson's disease dementia and normal elders.

Fan, Y., Zhao, Q., Xia, W., Tao, Y., Yu, W., Chen, M., Liu, Y., Zhao, J., Shen, Y., Sun, Y., Si, C., Zhang, S., Zhang, Y., Li, W., Liu, C., Wang, J., Li, D.

(2022) Cell Res 32: 585-588

• PubMed: 35477998 
• DOI: https://doi.org/10.1038/s41422-022-00665-3
• Primary Citation of Related Structures:  
  7X83, 7X84

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Organizational Affiliation: 
• Department of Neurology and National Research Center for Aging and Medicine & National Center for Neurological Disorders, State Key Laboratory of Medical Neurobiology, Huashan Hospital, Fudan University, Shanghai, China.
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China.
Bio-X-Renji Hospital Research Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China.
University of Chinese Academy of Sciences, Beijing, China.
Department of Anatomy and Histoembryology, School of Basic Medical Sciences, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University, Shanghai, China.
Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China. [e-mail].
University of Chinese Academy of Sciences, Beijing, China. [e-mail].
Department of Neurology and National Research Center for Aging and Medicine & National Center for Neurological Disorders, State Key Laboratory of Medical Neurobiology, Huashan Hospital, Fudan University, Shanghai, China. [e-mail].
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China. [e-mail].
Bio-X-Renji Hospital Research Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. [e-mail].
Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai, China. [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 46.51 kDa 
• Atom Count: 3,258 
• Modeled Residue Count: 405 
• Deposited Residue Count: 405 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protein 106B	A [auth B], B [auth A], C	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NUM4 (Homo sapiens) Explore Q9NUM4  Go to UniProtKB:  Q9NUM4
PHAROS:  Q9NUM4 GTEx:  ENSG00000106460

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-15 
Deposition Author(s): Zhao, Q.Y., Xia, W.C., Fan, Y., Sun, Y.P., Tao, Y.Q., Liu, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-06-15
  Type: Initial release
  
• Version 1.1: 2024-11-06
  Changes: Data collection, Structure summary