7X5H

Serotonin 5A (5-HT5A) receptor-Gi protein complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the ligand binding and G i coupling of serotonin receptor 5-HT 5A .

Tan, Y.Xu, P.Huang, S.Yang, G.Zhou, F.He, X.Ma, H.Xu, H.E.Jiang, Y.

(2022) Cell Discov 8: 50-50

  • DOI: https://doi.org/10.1038/s41421-022-00412-3
  • Primary Citation of Related Structures:  
    7X5H

  • PubMed Abstract: 

    5-hydroxytryptamine receptor 5A (5-HT 5A ) belongs to the 5-HT receptor family and signals through the G i/o protein. It is involved in nervous system regulation and an attractive target for the treatment of psychosis, depression, schizophrenia, and neuropathic pain. 5-HT 5A is the only G i/o -coupled 5-HT receptor subtype lacking a high-resolution structure, which hampers the mechanistic understanding of ligand binding and G i/o coupling for 5-HT 5A . Here we report a cryo-electron microscopy structure of the 5-HT 5A -G i complex bound to 5-Carboxamidotryptamine (5-CT). Combined with functional analysis, this structure reveals the 5-CT recognition mechanism and identifies the receptor residue at 6.55 as a determinant of the 5-CT selectivity for G i/o -coupled 5-HT receptors. In addition, 5-HT 5A shows an overall conserved G i protein coupling mode compared with other G i/o -coupled 5-HT receptors. These findings provide comprehensive insights into the ligand binding and G protein coupling of G i/o -coupled 5-HT receptors and offer a template for the design of 5-HT 5A -selective drugs.


  • Organizational Affiliation

    The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1354Homo sapiensMutation(s): 4 
Gene Names: GNAI1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens)
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PHAROS:  P63096
GTEx:  ENSG00000127955 
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UniProt GroupP63096
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1371Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-270Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16D [auth E]286Mus musculusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble cytochrome b562,5-hydroxytryptamine receptor 5A,hydroxytryptamine receptor 5AE [auth R]690Escherichia coliHomo sapiensMutation(s): 0 
Gene Names: cybCHTR5A
Membrane Entity: Yes 
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Find proteins for P47898 (Homo sapiens)
Explore P47898 
Go to UniProtKB:  P47898
PHAROS:  P47898
GTEx:  ENSG00000157219 
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UniProt GroupsP0ABE7P47898
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8K3 (Subject of Investigation/LOI)
Query on 8K3

Download Ideal Coordinates CCD File 
F [auth R]3-(2-azanylethyl)-1H-indole-5-carboxamide
C11 H13 N3 O
WKZLNEWVIAGNAW-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32171187

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-14
    Type: Initial release
  • Version 1.1: 2022-09-21
    Changes: Database references