7WXE | pdb_00007wxe

Crystal Structure of Imine Reductase from Paenibacillus mucilaginosus

• PDB DOI: https://doi.org/10.2210/pdb7WXE/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Paenibacillus mucilaginosus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-02-14 Released: 2023-02-22 
• Deposition Author(s): Wu, K.
• Funding Organization(s): Shanghai University of Medicine & Health Sciences

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.249 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Imine Reductase from Paenibacillus mucilaginosus

Wu, K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 67.1 kDa 
• Atom Count: 4,434 
• Modeled Residue Count: 566 
• Deposited Residue Count: 620 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
6-phosphogluconate dehydrogenase	A, B	310	Paenibacillus mucilaginosus	Mutation(s): 0  Gene Names: B2K_07400
UniProt
Find proteins for I0BDU9 (Paenibacillus mucilaginosus K02) Explore I0BDU9  Go to UniProtKB:  I0BDU9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.249 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 133.771	α = 90
b = 133.771	β = 90
c = 62.23	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): Wu, K.

---

Funding Organization	Location	Grant Number
Shanghai University of Medicine & Health Sciences	China	--

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2023-04-19
  Changes: Author supporting evidence, Refinement description
• Version 1.2: 2023-11-29
  Changes: Data collection, Refinement description