7WU9

Cryo-EM structure of the human EP3-Gi signaling complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural insights into the G protein selectivity revealed by the human EP3-G i signaling complex.

Suno, R.Sugita, Y.Morimoto, K.Takazaki, H.Tsujimoto, H.Hirose, M.Suno-Ikeda, C.Nomura, N.Hino, T.Inoue, A.Iwasaki, K.Kato, T.Iwata, S.Kobayashi, T.

(2022) Cell Rep 40: 111323-111323

  • DOI: https://doi.org/10.1016/j.celrep.2022.111323
  • Primary Citation of Related Structures:  
    7WU9

  • PubMed Abstract: 

    Prostaglandin receptors have been implicated in a wide range of functions, including inflammation, immune response, reproduction, and cancer. Our group has previously determined the crystal structure of the active-like EP3 bound to its endogenous agonist, prostaglandin E 2 . Here, we present the single-particle cryoelectron microscopy (cryo-EM) structure of the human EP3-G i signaling complex at a resolution of 3.4 Å. The structure reveals the binding mode of G i to EP3 and the structural changes induced in EP3 by G i binding. In addition, we compare the structure of the EP3-G i complex with other subtypes of prostaglandin receptors (EP2 and EP4) bound to G s that have been previously reported and examine the differences in amino acid composition at the receptor-G protein interface. Mutational analysis reveals that the selectivity of the G protein depends on specific amino acid residues in the second intracellular loop and TM5.


  • Organizational Affiliation

    Department of Medical Chemistry, Kansai Medical University, Hirakata 573-1010, Japan. Electronic address: sunory@hirakata.kmu.ac.jp.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prostaglandin E2 receptor EP3 subtypeA [auth R]325Homo sapiensMutation(s): 6 
Gene Names: PTGER3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P43115 (Homo sapiens)
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PHAROS:  P43115
GTEx:  ENSG00000050628 
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UniProt GroupP43115
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1B [auth A]355Homo sapiensMutation(s): 0 
Gene Names: GNAI1
Membrane Entity: Yes 
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Find proteins for P63096 (Homo sapiens)
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PHAROS:  P63096
GTEx:  ENSG00000127955 
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UniProt GroupP63096
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1C [auth B]345Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16E [auth S]255Mus musculusMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Agency for Medical Research and Development (AMED)JapanJP21am0101072 (support number 1113), JP19am0101115 (support number 2365)
Japan Agency for Medical Research and Development (AMED)JapanJP21gm0910007
Japan Agency for Medical Research and Development (AMED)JapanJP21am0401020
Japan Society for the Promotion of Science (JSPS)Japan15K08268, 19H03428,20H03434
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan21H05112
Japan Agency for Medical Research and Development (AMED)JapanJP20ak010110

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release
  • Version 1.1: 2023-03-01
    Changes: Database references
  • Version 1.2: 2023-03-08
    Changes: Structure summary
  • Version 1.3: 2023-10-04
    Changes: Data collection, Structure summary