7WU7

Prefoldin-tubulin-TRiC complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.85 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural visualization of the tubulin folding pathway directed by human chaperonin TRiC/CCT.

Gestaut, D.Zhao, Y.Park, J.Ma, B.Leitner, A.Collier, M.Pintilie, G.Roh, S.H.Chiu, W.Frydman, J.

(2022) Cell 185: 4770-4787.e20

  • DOI: https://doi.org/10.1016/j.cell.2022.11.014
  • Primary Citation of Related Structures:  
    7TRG, 7TTN, 7TTT, 7TUB, 7WU7

  • PubMed Abstract: 

    The ATP-dependent ring-shaped chaperonin TRiC/CCT is essential for cellular proteostasis. To uncover why some eukaryotic proteins can only fold with TRiC assistance, we reconstituted the folding of β-tubulin using human prefoldin and TRiC. We find unstructured β-tubulin is delivered by prefoldin to the open TRiC chamber followed by ATP-dependent chamber closure. Cryo-EM resolves four near-atomic-resolution structures containing progressively folded β-tubulin intermediates within the closed TRiC chamber, culminating in native tubulin. This substrate folding pathway appears closely guided by site-specific interactions with conserved regions in the TRiC chamber. Initial electrostatic interactions between the TRiC interior wall and both the folded tubulin N domain and its C-terminal E-hook tail establish the native substrate topology, thus enabling C-domain folding. Intrinsically disordered CCT C termini within the chamber promote subsequent folding of tubulin's core and middle domains and GTP-binding. Thus, TRiC's chamber provides chemical and topological directives that shape the folding landscape of its obligate substrates.


  • Organizational Affiliation

    Department of Biology, Stanford University, Stanford, CA 94305, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 1A [auth 1]122Homo sapiensMutation(s): 0 
Gene Names: PFDN1PFD1
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PHAROS:  O60925
GTEx:  ENSG00000113068 
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UniProt GroupO60925
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 2B [auth 2]154Homo sapiensMutation(s): 0 
Gene Names: PFDN2PFD2HSPC231
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PHAROS:  Q9UHV9
GTEx:  ENSG00000143256 
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UniProt GroupQ9UHV9
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 3C [auth 3]197Homo sapiensMutation(s): 0 
Gene Names: VBP1PFDN3
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PHAROS:  P61758
GTEx:  ENSG00000155959 
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UniProt GroupP61758
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 4D [auth 4]140Homo sapiensMutation(s): 0 
Gene Names: PFDN4PFD4
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Find proteins for Q9NQP4 (Homo sapiens)
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PHAROS:  Q9NQP4
GTEx:  ENSG00000101132 
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UniProt GroupQ9NQP4
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 5E [auth 5]140Homo sapiensMutation(s): 0 
Gene Names: PFDN5MM1PFD5
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GTEx:  ENSG00000123349 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Prefoldin subunit 6F [auth 6]129Homo sapiensMutation(s): 0 
Gene Names: PFDN6HKE2PFD6
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GTEx:  ENSG00000204220 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaG [auth A],
O [auth I]
556Homo sapiensMutation(s): 0 
Gene Names: TCP1CCT1CCTA
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PHAROS:  P17987
GTEx:  ENSG00000120438 
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UniProt GroupP17987
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaH [auth B],
P [auth J]
535Homo sapiensMutation(s): 0 
Gene Names: CCT299D8.1CCTB
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GTEx:  ENSG00000166226 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaI [auth C],
Q [auth K]
545Homo sapiensMutation(s): 0 
Gene Names: CCT3CCTGTRIC5
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Find proteins for P49368 (Homo sapiens)
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GTEx:  ENSG00000163468 
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UniProt GroupP49368
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaJ [auth D],
R [auth L]
539Homo sapiensMutation(s): 0 
Gene Names: CCT4CCTDSRB
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Find proteins for P50991 (Homo sapiens)
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GTEx:  ENSG00000115484 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilonK [auth E],
S [auth M]
541Homo sapiensMutation(s): 0 
Gene Names: CCT5CCTEKIAA0098
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Find proteins for P48643 (Homo sapiens)
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GTEx:  ENSG00000150753 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaL [auth F],
T [auth N]
531Homo sapiensMutation(s): 0 
Gene Names: CCT6ACCT6CCTZ
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Find proteins for P40227 (Homo sapiens)
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GTEx:  ENSG00000146731 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaM [auth G],
U [auth O]
543Homo sapiensMutation(s): 0 
Gene Names: CCT7CCTHNIP7-1
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Find proteins for Q99832 (Homo sapiens)
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GTEx:  ENSG00000135624 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaN [auth H],
V [auth P]
547Homo sapiensMutation(s): 0 
Gene Names: CCT8C21orf112CCTQKIAA0002
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Find proteins for P50990 (Homo sapiens)
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GTEx:  ENSG00000156261 
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UniProt GroupP50990
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.85 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.2.0
MODEL REFINEMENTPHENIX1.19
MODEL REFINEMENTCoot0.9.6
MODEL REFINEMENTNAMD

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-21
    Type: Initial release